Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2814 190 4e-43 seq6576 167 5e-36 seq6840 161 2e-34 seq1875 154 3e-32 seq9259 132 9e-26 >seq2814 Length=333951 Score = 190 bits (210), Expect = 4e-43 Identities = 171/215 (80%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||| ||| | |||| ||| || || ||||| ||||| |||||||| | | | ||| Sbjct 221361 CGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCA 221302 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| | || || || ||||| || | || |||||| ||||| || || || ||||| Sbjct 221301 TCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTG 221242 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||||||||| ||||| ||||| |||||||||||| ||| || |||||||| |||||| Sbjct 221241 TCTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCCACTTCCAATGTTATC 221182 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||||||||| |||||||||||||| Sbjct 221181 GTCTTACCAGTCAACGTCTTCACAAATATCTGCAT 221147 Score = 190 bits (210), Expect = 4e-43 Identities = 171/215 (80%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||| ||| | |||| ||| || || ||||| ||||| |||||||| | | | ||| Sbjct 221589 CGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCA 221530 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| | || || || ||||| || | || |||||| ||||| || || || ||||| Sbjct 221529 TCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTG 221470 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||||||||| ||||| ||||| |||||||||||| ||| || |||||||| |||||| Sbjct 221469 TCTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCCACTTCCAATGTTATC 221410 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||||||||| |||||||||||||| Sbjct 221409 GTCTTACCAGTCAACGTCTTCACAAATATCTGCAT 221375 Score = 172 bits (190), Expect = 1e-37 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||| ||| | |||| ||| || || ||||| ||||| |||||||| | | | ||| Sbjct 220984 CGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCA 220925 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| | || || || ||||| || | || |||||| ||||| || || |||||||| Sbjct 220924 TCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCTTCCTTG 220865 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||||||||| ||||| ||||| || |||||||| | | ||||||||| | ||| || Sbjct 220864 TCTTGAATCTTCGCTTTCACATTCTCGATCGTATCGCTGGCTTCTACTTCAAGAGTGATG 220805 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||| ||||| |||||||||||||| Sbjct 220804 GTCTTCCCAGTCAAAGTCTTCACAAATATCTGCAT 220770 Score = 129 bits (142), Expect = 1e-24 Identities = 89/101 (88%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 82710 TCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAA 82769 ||||| ||||||||||| ||||| ||||| |||||||||||| ||| || |||||||| Sbjct 221703 TCCTTGTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCCACTTCCAAT 221644 Query 82770 GTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||||| || ||||||||||| |||||||||||||| Sbjct 221643 GTTATCGTCTTACCAGTCAACGTCTTCACAAATATCTGCAT 221603 >seq6576 Length=99650 Score = 167 bits (184), Expect = 5e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||| ||| | |||| ||| || || ||||| ||||| |||||||| | | | ||| Sbjct 35488 CGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCA 35547 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| | || || || ||||| || | || |||||| ||||| || || |||||||| Sbjct 35548 TCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCTTCCTTG 35607 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||||||||| ||||| ||||| ||||||||||| | | ||||||||| | ||| || Sbjct 35608 TCTTGAATCTTCGCTTTCACATTCTCAATCGTATCGCTGGCTTCTACTTCAAGAGTGATG 35667 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || ||||||||||| || || |||||||| Sbjct 35668 GTTTTCCCAGTCAACGTCTTCACGAAAATCTGCAT 35702 Score = 140 bits (154), Expect = 6e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | |||| || || || ||||| ||||| |||||||| | | | ||| Sbjct 31357 ACGAAGTACGAGATGCAATGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACC 31416 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | || || || ||||| || | || |||||| ||||| || || |||||||| Sbjct 31417 ATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCTTCCTT 31476 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||||| ||||| ||||| |||||||||||| ||| || ||||| || ||||| Sbjct 31477 GTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCCACTTCTAATGTTAT 31536 Query 82775 CGTCT 82779 ||||| Sbjct 31537 CGTCT 31541 Score = 129 bits (142), Expect = 1e-24 Identities = 89/101 (88%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 82710 TCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAA 82769 ||||| ||||||||||| ||||| ||||| |||||||||||| ||| || |||||||| Sbjct 35374 TCCTTGTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCCACTTCCAAT 35433 Query 82770 GTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||||| || ||||||||||| |||||||||||||| Sbjct 35434 GTTATCGTCTTACCAGTCAACGTCTTCACAAATATCTGCAT 35474 >seq6840 Length=28952 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| ||||| ||||| || |||||||| || || || |||| Sbjct 19829 TACCACCACGTAGACGAAGAACCAAGTGTAGAGTCGACTCTTTCTGGATGTTGTAGTCAG 19888 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | | || ||||| | || || |||||||| ||||| | ||| || ||||||| Sbjct 19889 ATAAAGTACGGCCATCTTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAG 19948 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || |||||||| || ||||| || || |||||||||||| | | |||| Sbjct 19949 GAATACCTTCTTTGTCTTGAATTTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCTA 20008 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | ||| ||||| ||||| || | || || || || |||||||| Sbjct 20009 CCTCGAGAGTGATCGTTTTGCCGGTAAGTGTTTTCACGAAGATCTGCAT 20057 Score = 159 bits (176), Expect = 7e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 82593 AAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTA 82652 ||||||| |||||| || | || || |||||||| || || || ||||||| | | | Sbjct 19612 AAACGCAAAACTAAATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGATAAAGTACGG 19671 Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| | || || |||||||| ||||| | ||| || |||||||| || ||||| Sbjct 19672 CCATCTTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGGAATACCTTCT 19731 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 || |||||||| || ||||| || || |||||||||||| | | ||||| || | ||| Sbjct 19732 TTGTCTTGAATTTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCTACCTCGAGAGTG 19791 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| ||||| || | |||||| || || || ||||| Sbjct 19792 ATCGTTTTGCCGGTAAGCGTCTTCACGAAAATTTGCAT 19829 >seq1875 Length=193106 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||||||| | || ||||| ||||| ||||| ||||| ||||| || ||| |||| || Sbjct 183853 CGCAGAACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAATCCGAAAGAGTTCTCCCA 183912 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || | || || || || || || | || || || || ||||| |||||||| ||| Sbjct 183913 TCCTCCAACTGCTTCCCGGCGAAAATCAATCGCTGCTGGTCGGGAGGAATTCCTTCTTTA 183972 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || ||||| || |||||||| || ||| || || | || || Sbjct 183973 TCCTGTATCTTAGCCTTCACATTCTCGATCGTATCCGAAGATTCCACCTCTAGGGTGATG 184032 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| ||||| ||||| |||||||||||||| Sbjct 184033 GTCTTGCCCGTCAAAGTCTTCACAAATATCTGCAT 184067 >seq9259 Length=16035 Score = 132 bits (146), Expect = 9e-26 Identities = 139/183 (76%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | |||| || || || ||||| ||||| |||||||| | | | ||| Sbjct 15853 ACGAAGTACGAGATGCAATGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACC 15912 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | || || || ||||| || | || |||||| ||||| || || || ||||| Sbjct 15913 ATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTT 15972 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||||| ||||| ||||| |||||||||||| ||| || |||||||| |||| Sbjct 15973 GTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCCACTTCCAATCTTAT 16032 Query 82775 CGT 82777 ||| Sbjct 16033 CGT 16035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981573619193562