Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq6840 113 4e-20 seq6576 102 8e-17 seq584 102 8e-17 seq1875 95.1 1e-14 seq2168 91.5 1e-13 seq2814 89.7 5e-13 seq3632 82.4 7e-11 >seq6840 Length=28952 Score = 113 bits (124), Expect = 4e-20 Identities = 153/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||||| ||| ||||||||||| || ||||| || | || | | | || || | Sbjct 19624 AAATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGATAAAGTACGGCCA-TCTTCCAA 19682 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || |||| || || |||||||| ||||| || ||||| ||||| ||| Sbjct 19683 CTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCT-TGAA 19741 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| |||| | | ||||| ||| || ||| ||| || |||| |||| ||||||| Sbjct 19742 TTTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCTACCTCGAGAGTGATCGTTTTGC 19801 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || |||||||| ||||| Sbjct 19802 CGGTAAGCGTCTTCACGAAAATTTGCAT 19829 Score = 109 bits (120), Expect = 5e-19 Identities = 152/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || |||| || ||||||||||| || ||||| || | || | | | || || | Sbjct 19852 AAGTGTAGAGTCGACTCTTTCTGGATGTTGTAGTCAGATAAAGTACGGCCA-TCTTCCAA 19910 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || |||| || || |||||||| ||||| || ||||| ||||| ||| Sbjct 19911 CTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCT-TGAA 19969 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| |||| | | ||||| ||| || ||| ||| || |||| |||| ||||||| Sbjct 19970 TTTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCTACCTCGAGAGTGATCGTTTTGC 20029 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || ||||| ||||| |||||||| Sbjct 20030 CGGTAAGTGTTTTCACGAAGATCTGCAT 20057 >seq6576 Length=99650 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| ||||||||||| || ||| ||| | || || | |||||| || Sbjct 35506 GTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCA-TCTTCCAACTGCTTCCC 35564 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | || || ||||| || || |||||||||||||| ||||| || Sbjct 35565 CGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTCGCTTT 35624 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||| ||| ||| || || || | |||| |||||| || |||| || Sbjct 35625 CACATTCTCAATCGTATCGCTGGCTTCTACTTCAAGAGTGATGGTTTTCCCAGTCAACGT 35684 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 35685 CTTCACGAAAATCTGCAT 35702 >seq584 Length=457511 Score = 102 bits (112), Expect = 8e-17 Identities = 233/346 (67%), Gaps = 6/346 (2%) Strand=Plus/Minus Query 148042 ACAGATTAAACGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGA 148101 |||| || ||||||||||| |||||||| |||| ||| || || |||||||| || |||| Sbjct 425738 ACAGGTTTAACGACTGGCTTTGGTCAATAAACGGGCCGCGATCCGCGGCCATATCGATGA 425679 Query 148102 GTCGCTTTATCT-TCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATG 148160 | || ||| | | |||||||| | ||||||||||| | || |||| | || || Sbjct 425678 G-CGTTTTCTGTGATATCTCCCATACGGTCTTGTACAGGGGTTTCATATCTTGTGGGATA 425620 Query 148161 CCGTCGATGCGCTGCACCGAGCCGCGGTGCGCAAAAAT--CTGATTGCGCATTTCGTCCG 148218 || | |||| | || | |||||| ||| |||| ||| | || | || || || | Sbjct 425619 CCCTGGATGTGTTGAATCGAGCCCTGGTTGGCAACAATTGCCGACT--TCAGGTCTTCGG 425562 Query 148219 TGTATAGGTTGAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGC 148278 | || | || ||| || || || || || |||| | | |||||||||| Sbjct 425561 ACCACAGTTCCGCCTTGATTAGATCTCTGAGTAGGTATGGATTGATTATTTGAAACTCGC 425502 Query 148279 CGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGC 148338 | || || || || || ||||| || || ||||||| | || |||| | Sbjct 425501 CACTTAGGACACGTCGTGAGTAAACGTTACTGGTCTGCGGTTCAGTGGCTTCCGTGTTAC 425442 Query 148339 CCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAG 148384 |||| || ||||| |||| || |||||||| ||||| ||||| Sbjct 425441 CCAAGATTTGCGCTGTCGAAGCTGTGGGCATAGGCGCTATGAGCAG 425396 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 148824 ATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCG 148883 || || || ||||| || || || | || || || | || || || || ||||||| Sbjct 424656 ATGGAAGCAAGATTACAAACAGCTATTTCGTCGGGCGAACTATATTCGACAATCTCGGTA 424597 Query 148884 CACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCG 148943 |||| |||||||||||||| |||| ||| | |||||||| |||| ||||| ||| Sbjct 424596 CACAAGTTGCTGCATTTGATTGTTCCCAGGTTTTGCTGATTGCTTTTGCGATTGCATGCG 424537 Query 148944 TCCTTGTACAGCATGTACGG 148963 || ||||| |||||| |||| Sbjct 424536 TCTTTGTAAAGCATGAACGG 424517 >seq1875 Length=193106 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || || ||||| ||||||||||| | || | ||||| | |||||| || Sbjct 183871 GTCGATTCCTTCTGAATATTGTAATCCGAAAGAGTTCTCCCATCCTCCAACTGCTTCCCG 183930 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| |||| | ||||||||||||||||| || ||||| || || ||||| ||| Sbjct 183931 GCGAAAATCAATCGCTGCTGGTCGGGAGGAATTCCTTCTTTATCCTGTATCTTAGCCTTC 183990 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||| || | | ||||| || | ||||| ||| ||||| |||| ||| Sbjct 183991 ACATTCTCGATCGTATCCGAAGATTCCACCTCTAGGGTGATGGTCTTGCCCGTCAAAGTC 184050 Query 133644 TTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 184051 TTCACAAATATCTGCAT 184067 >seq2168 Length=109785 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/205 (70%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 120638 ACAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACG 120697 ||| ||| ||||||||||| || ||||||||||| || | ||| ||||| || ||||| | Sbjct 2828 ACATGCAGGCAAAGTCCGTATGTAGGCCCTCGTCCCGAGTTATTAGCTCATTACTAAATG 2769 Query 120698 TCAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAA 120757 | || || ||||| | || | |||| | |||| || || ||||| || || || | Sbjct 2768 TTAGACCTGGCATCAGTCCCCGCTTCTTAAGCCAGAAGATTGCAGCAAAACTCCCGGAGA 2709 Query 120758 AGAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGC 120817 |||| || || || || ||| | || || | | || || ||||| || |||| Sbjct 2708 AGAAAACTCCTTCGACCGCAGCATAAGCCACAAGTCTTTCCGCAAACGT---CGACTTGG 2652 Query 120818 TGT---CGATCCACTTCATGGCCCA 120839 ||| ||||||| |||| ||||| Sbjct 2651 TGTCACCGATCCAGTTCAGCGCCCA 2627 >seq2814 Length=333951 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| ||||||||||| || ||| ||| | || || | |||||| || Sbjct 220966 GTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCA-TCTTCCAACTGCTTCCC 220908 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | || || ||||| || || |||||||||||||| ||||| || Sbjct 220907 CGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTCGCTTT 220848 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||| | ||| ||| ||| || || || | |||| ||| || || |||| ||| Sbjct 220847 CACATTCTCGATCGTATCGCTGGCTTCTACTTCAAGAGTGATGGTCTTCCCAGTCAAAGT 220788 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 220787 CTTCACAAATATCTGCAT 220770 >seq3632 Length=73641 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/205 (69%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 120638 ACAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACG 120697 ||| ||| ||||||||||| || || || |||||||| ||| ||||| || ||||| | Sbjct 32178 ACATGCAAGCAAAGTCCGTATGTAGACCTTCGTCGCGACTTATTAGCTCATTACTAAATG 32119 Query 120698 TCAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAA 120757 | || || ||||| | || | |||| | |||| || || ||||| || || || | Sbjct 32118 TTAGACCTGGCATCAGTCCCCGCTTCTTAAGCCAGAAGATTGCAGCAAAACTCCCGGAGA 32059 Query 120758 AGAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGC 120817 |||| || || || || ||| | || || | | || || ||||| || |||| Sbjct 32058 AGAAAACTCCTTCGACTGCAGCATAAGCCACAAGTCTTTCCGCAAACGT---CGACTTGG 32002 Query 120818 TGT---CGATCCACTTCATGGCCCA 120839 ||| ||||||| |||| ||||| Sbjct 32001 TGTCACCGATCCAGTTCAGCGCCCA 31977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483298990043920