Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01]
20,158 sequences; 1,275,107,963 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq6840 118 7e-22
>seq6840
Length=28952
Score = 118 bits (130), Expect = 7e-22
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| | ||||| |||||||| |||||| || |||||||| || ||
Sbjct 19830 ACCACCACGTAGACGAAGAACCAAGTGTAGAGTCGACTCTTTCTGGATGTTGTAGTCAGA 19889
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
| || || | || ||||| || || || |||||||| | ||| ||||| ||| | ||
Sbjct 19890 TAAAGTACGGCCATCTTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGG 19949
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| |||||||||||| |||||| |||| || | || | || || || || || |
Sbjct 19950 AATACCTTCTTTGTCTTGAATTTTGGCTTTC-ACGTTCTCAATCGTATCACTGGACTCTA 20008
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || | ||||||||||| || || | ||||| || |||||||||||
Sbjct 20009 CCTCGAGAGTGATCGTTTTGCCGGTAAGTGTTTTCACGAAGATCTGCAT 20057
Score = 111 bits (122), Expect = 1e-19
Identities = 164/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | ||||| || || ||||||| || |||||| || |||||||| || ||
Sbjct 19602 ACCACCGCGTAAACGCAAAACTAAATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGA 19661
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
| || || | || ||||| || || || |||||||| | ||| ||||| ||| | ||
Sbjct 19662 TAAAGTACGGCCATCTTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGG 19721
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| |||||||||||| |||||| |||| || | || | || || || || || |
Sbjct 19722 AATACCTTCTTTGTCTTGAATTTTGGCTTTC-ACGTTCTCAATCGTATCACTGGACTCTA 19780
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | ||||||||||| || || | ||| || || || || ||||||
Sbjct 19781 CCTCGAGAGTGATCGTTTTGCCGGTAAGCGTCTTCACGAAAATTTGCATA 19830
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328623245439360
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |