Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2814 122 2e-22 seq6840 111 4e-19 seq6576 109 1e-18 seq1875 100 7e-16 >seq2814 Length=333951 Score = 122 bits (134), Expect = 2e-22 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| || ||| | || || || ||||| || ||||||||||| | ||| Sbjct 221150 CAGATATTTGTGAAGACGTTGACTGGTAAGACGATAACATTGGAAGTGGAGGCTAGTGAT 221209 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||||| || ||||||||| || || || ||| || ||| || Sbjct 221210 ACGATTGAGAATGTGAAAGCGAA-GATTCAAGACAAGGAGGGCATTCCACCAGACCAACA 221268 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | || | || || || || ||||||||||||||||| | || ||| | |||||||| | Sbjct 221269 ACGATTGATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTGATTACAATAT 221328 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||| ||||| ||| | || ||||||||| ||||||| Sbjct 221329 CCAGAAGGAGTCAACTTTGCATCTTGTTTTGCGACTTCG 221367 Score = 122 bits (134), Expect = 2e-22 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| || ||| | || || || ||||| || ||||||||||| | ||| Sbjct 221378 CAGATATTTGTGAAGACGTTGACTGGTAAGACGATAACATTGGAAGTGGAGGCTAGTGAT 221437 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||||| || ||||||||| || || || ||| || ||| || Sbjct 221438 ACGATTGAGAATGTGAAAGCGAA-GATTCAAGACAAGGAGGGCATTCCACCAGACCAACA 221496 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | || | || || || || ||||||||||||||||| | || ||| | |||||||| | Sbjct 221497 ACGATTGATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTGATTACAATAT 221556 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||| ||||| ||| | || ||||||||| ||||||| Sbjct 221557 CCAGAAGGAGTCAACTTTGCATCTTGTTTTGCGACTTCG 221595 Score = 113 bits (124), Expect = 1e-19 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| || || | || || || || |||||| | ||||| ||| || Sbjct 220773 CAGATATTTGTGAAGACTTTGACTGGGAAGACCATCACTCTTGAAGTAGAAGCCAGCGAT 220832 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||||| || ||||||||| || ||||| ||| || ||| || Sbjct 220833 ACGATCGAGAATGTGAAAGCGAA-GATTCAAGACAAGGAAGGCATTCCACCAGACCAACA 220891 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | || | || || || || ||||||||||||||||| | || ||| | |||||||| | Sbjct 220892 ACGATTGATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTGATTACAATAT 220951 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||| ||||| ||| | || ||||||||| ||||||| Sbjct 220952 CCAGAAGGAGTCAACTTTGCATCTTGTTTTGCGACTTCG 220990 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 ||| || | || || || || ||||||||||||||||| | || ||| | |||||||| Sbjct 221039 CAACGATTGATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTGATTACAAT 221098 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||| ||||| ||| | || ||||||||| ||||||| Sbjct 221099 ATCCAGAAGGAGTCAACTTTGCATCTTGTTTTGCGACTTCG 221139 >seq6840 Length=28952 Score = 111 bits (122), Expect = 4e-19 Identities = 146/198 (74%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTC--TGACACAGTCGAAT 206242 ||||| || || || |||||||||||| | || || || || | ||| || | || Sbjct 20042 AAAACACTTACCGGCAAAACGATCACTCTCGAGGTAGA--GTCCAGTGATACGATTGAGA 19985 Query 206243 CAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATC 206301 || ||||| ||| |||||||| |||||||| ||| || ||| ||| | || || Sbjct 19984 ACGTGAAAGCCAAA-ATTCAAGACAAAGAAGGTATTCCTCCAGACCAGCAACGTCTAATT 19926 Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361 || || || ||||||||||||||||| | ||||| | || |||||| ||||||||||| Sbjct 19925 TTTGCTGGCAAGCAGTTGGAAGATGGCCGTACTTTATCTGACTACAACATCCAGAAAGAG 19866 Query 206362 TCTACTCTTCACCTTGTT 206379 || ||||| ||| | ||| Sbjct 19865 TCGACTCTACACTTGGTT 19848 Score = 102 bits (112), Expect = 2e-16 Identities = 146/201 (73%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTC--TGACACAGTCGAAT 206242 || ||||| || || |||||||||||| | || || || || | ||| || | || Sbjct 19814 AAGACGCTTACCGGCAAAACGATCACTCTCGAGGTAGA--GTCCAGTGATACGATTGAGA 19757 Query 206243 CAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATC 206301 || ||||| ||| |||||||| |||||||| ||| || ||| ||| | || || Sbjct 19756 ACGTGAAAGCCAAA-ATTCAAGACAAAGAAGGTATTCCTCCAGACCAGCAACGTCTAATT 19698 Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361 || || || ||||||||||||||||| | ||||| | || |||||| ||||||||||| Sbjct 19697 TTTGCTGGCAAGCAGTTGGAAGATGGCCGTACTTTATCTGACTACAACATCCAGAAAGAG 19638 Query 206362 TCTACTCTTCACCTTGTTTTG 206382 || || | || | |||||| Sbjct 19637 TCAACCTTACATTTAGTTTTG 19617 >seq6576 Length=99650 Score = 109 bits (120), Expect = 1e-18 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||| | || || ||||| |||||| | ||||| ||| || || | || Sbjct 35687 AAGACGTTGACTGGGAAAACCATCACTCTTGAAGTAGAAGCCAGCGATACGATTGAGAAT 35628 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||||||||| || ||||| ||| || ||| ||| || | || || Sbjct 35627 GTGAAAGCGAA-GATTCAAGACAAGGAAGGCATTCCACCAGACCAACAACGATTGATATT 35569 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || ||||||||||||||||| | || ||| | |||||||| ||||||| ||||| Sbjct 35568 TGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTGATTACAATATCCAGAAGGAGTC 35509 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| | || ||||||||| ||||||| Sbjct 35508 AACTTTGCATCTTGTTTTGCGACTTCG 35482 Score = 84.2 bits (92), Expect = 5e-11 Identities = 119/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 206203 ACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCAAAAGATTCA 206261 ||||| || || |||||||| | ||| || | || || ||||| || |||||| Sbjct 31539 ACGATAACATTAGAAGTGGAGGCTAGTGATACGATTGAGAATGTGAAAGCGAA-GATTCA 31481 Query 206262 AGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGA 206321 ||| || ||||| ||| || ||| ||| || | || || || || ||||||||||| Sbjct 31480 AGACAAGGAAGGCATTCCACCAGACCAACAACGATTGATATTTGCGGGGAAGCAGTTGGA 31421 Query 206322 AGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 |||||| | || ||| | |||||||| ||||||| ||||| || Sbjct 31420 AGATGGTCGTACGTTGTCTGATTACAATATCCAGAAGGAGTCAAC 31376 >seq1875 Length=193106 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| || || | || || || || ||||| | || |||||| ||| || Sbjct 184064 CAGATATTTGTGAAGACTTTGACGGGCAAGACCATCACCCTAGAGGTGGAATCTTCGGAT 184005 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || |||||||||||| || ||| || Sbjct 184004 ACGATCGAGAATGTGAAGGCTAAGATACAGGATAAAGAAGGAATTCCTCCCGACCAGCAG 183945 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | || |||||||| ||||||||||| ||||| || ||| | | |||||||| | Sbjct 183944 CGATTGATTTTCGCCGGGAAGCAGTTGGAGGATGGGAGAACTCTTTCGGATTACAATATT 183885 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || || ||||| || || ||| || | || || Sbjct 183884 CAGAAGGAATCGACTCTCCATCTGGTTCTGCGCCTGCG 183847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181515565971518