Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq6840 123 2e-23 seq584 96.9 3e-15 seq6576 86.0 6e-12 >seq6840 Length=28952 Score = 123 bits (136), Expect = 2e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 || || |||||||| ||||||| | |||||||||| || ||||||||||| | ||| Sbjct 19609 CGTAAACGCAAAACTAAATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGATAAAGTA 19668 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || |||||| | ||| || || | | | |||||||| || || |||||||| || ||| Sbjct 19669 CGGCCATCTTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGGAATACCT 19728 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 ||||| || |||||| ||||| | || | ||||| | | ||| || |||| Sbjct 19729 TCTTTGTCTTGAATTTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCTACCTCGAGA 19788 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | |||||| || || || || || | |||||| ||||| Sbjct 19789 GTGATCGTTTTGCCGGTAAGCGTCTTCACGAAAATTTGCAT 19829 Score = 111 bits (122), Expect = 1e-19 Identities = 156/218 (72%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| |||| | |||||||| || ||||||||||| | ||||| |||||| Sbjct 19848 AACCAAGTGTAGAGTCGACTCTTTCTGGATGTTGTAGTCAGATAAAGTACGGCCATCTTC 19907 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | ||| || || | | | |||||||| || || |||||||| || |||||||| || Sbjct 19908 CAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTTG 19967 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| ||||| | || | ||||| | | ||| || |||| || | |||||| Sbjct 19968 AATTTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCTACCTCGAGAGTGATCGTTTT 20027 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCATGAC-TTAT 132130 || || || ||||| | ||| |||||||| || |||| Sbjct 20028 GCCGGTAAGTGTTTTCACGAAGATCTGCATCACGTTAT 20065 >seq584 Length=457511 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 147409 AGTTTCTCGAAATCATAAGTCCCGTCTTCGACACGTACGCAT--TGGTTCACGGCGATAG 147466 ||||| ||||||||| | || | | ||| ||||| | || || | || || | Sbjct 424710 AGTTTATCGAAATCAAAGGTGCGCTTTTC--CACGTCCACAAAATGACCAAGGGAAATGG 424653 Query 147467 ACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACA 147526 | || ||||| || || || | || |||| || || | || || |||| |||| Sbjct 424652 AAGCAAGATTACAAACAGCTATTTCGTCGGGCGAACTATATTCGACAATCTCGGTACACA 424593 Query 147527 GGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTT 147586 |||||||||||| || ||||| ||||||||||||||||| |||||||| ||||||| Sbjct 424592 AGTTGCTGCATTTGATTGTTCCCAGGTTTTGCTGATTGCTTTTGCGATTGCATGCGTCTT 424533 Query 147587 TGAAGAGCATGTACGG 147602 || | |||||| |||| Sbjct 424532 TGTAAAGCATGAACGG 424517 >seq6576 Length=99650 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||||||| | ||| | ||||||| || || || ||||| || || ||||| | Sbjct 35488 CGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCA 35547 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | ||| || || | | | || | || ||||| ||||| || |||||||| || Sbjct 35548 TCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCTTCCTTG 35607 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || ||||| | || | |||||| | | || ||||| | || | Sbjct 35608 TCTTGAATCTTCGCTTTCACATTCTCAATCGTATCGCTGGCTTCTACTTCAAGAGTGATG 35667 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||||| || || | |||||||||||| Sbjct 35668 GTTTTCCCAGTCAACGTCTTCACGAAAATCTGCAT 35702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476491105892880