Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq6840 100 3e-16 seq584 98.7 1e-15 >seq6840 Length=28952 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 ||||| || | |||| || || || || || ||||||||||| | || | Sbjct 19615 CGCAAAACTAAATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGATAAAGTACGGCCA 19674 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || | ||| ||||| |||||||| | ||| ||||| || || || || |||||||| Sbjct 19675 TCTTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGGAATACCTTCTTTG 19734 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 ||||||||||| ||| || || | || || || || || |||||||| || Sbjct 19735 TCTTGAATTTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCTACCTCGAGAGTGATC 19794 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| ||||| | || || |||||||||||||| Sbjct 19795 GTTTTGCCGGTAAGCGTCTTCACGAAAATTTGCAT 19829 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 |||||| || || || || || ||||||||||| | || | || || | ||| Sbjct 19854 GTGTAGAGTCGACTCTTTCTGGATGTTGTAGTCAGATAAAGTACGGCCATCTTCCAACTG 19913 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| |||||||| | ||| ||||| || || || || |||||||| ||||||||||| Sbjct 19914 CTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTTGAATTTT 19973 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||| || || | || || || || || |||||||| || ||||| ||||| Sbjct 19974 GGCTTTCACGTTCTCAATCGTATCACTGGACTCTACCTCGAGAGTGATCGTTTTGCCGGT 20033 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | ||||| ||||| || ||||| Sbjct 20034 AAGTGTTTTCACGAAGATCTGCAT 20057 >seq584 Length=457511 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 8236 ATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAAC 8295 |||||| || |||| ||||| || | |||| |||||| ||||||||||| ||||| Sbjct 424487 ATTATCCAAGCCCAAATTGAAACGGGGAATCCGTTCATGCTTTACAAAGACGCATGCAAT 424546 Query 8296 GCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATT 8355 |||||||||||| ||| |||| || || |||||||| |||| | || ||| Sbjct 424547 CGCAAAAGCAATCAGCAAAACCTGGGAACAATCAAATGCAGCAACTTGTGTACCGAGATT 424606 Query 8356 GTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTC 8402 || | || || ||||||||||| | || ||||| ||||| || || Sbjct 424607 GTCGAATATAGTTCGCCCGACGAAATAGCTGTTTGTAATCTTGCTTC 424653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505271052238160