Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2168 143 4e-29 seq3632 131 2e-25 seq584 118 1e-21 >seq2168 Length=109785 Score = 143 bits (158), Expect = 4e-29 Identities = 408/634 (64%), Gaps = 41/634 (6%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||| ||||| |||||||||||| || | | | |||| || ||| |||||| || Sbjct 2824 GCAGGCAAAGTCCGTATGTAGGCCCTCGTCCCGAGTTATTAGCTCATTACTAAATGTTAG 2765 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 || ||||| || || ||||| || ||||| || || ||||||||| || || ||||| Sbjct 2764 ACCTGGCATCAGTCCCCGCTTCTTAAGCCAGAAGATTGCAGCAAAACTCCCGGAGAAGAA 2705 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT-- 39793 | ||||| || || ||| | || |||||||| || | ||| | | | | ||| Sbjct 2704 AACTCCTTCGACCGCAGCATAAGCCACAAGTCTTTCCGCA-AACGTCGA-CTTGGTGTCA 2647 Query 39794 ---ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850 ||||| ||| | ||||| | |||||| | ||||| || | || ||| Sbjct 2646 CCGATCCAGTTCAGCGCCCATTGAGCTTTGCGTTCCACACATTCCAGATTGCGAATTGCA 2587 Query 39851 TTAAAGAGATAATGT----------------------------------TTTTCATCACT 39876 ||||| ||| ||| ||||| | Sbjct 2586 TTAAATAGAAAATCCCTACACGAAAAACGACAGACAATAGGCTACTTACTTTTCTTTCGG 2527 Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||||| | |||||||||||| | |||| |||||||| || || |||||||||| ||| Sbjct 2526 ATCTTTGATATATGTATCTATGAGAAGACAGTACATTTCCGAGTGTATGTTTTCAAACGC 2467 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC 39996 ||||||| || || ||||| | ||||| | || || || ||| | |||| ||| Sbjct 2466 GATCTGAATGCCATAGAAACAACGAGCTTCTGGGATCTGCACTTCTTGGCTGAATCGTTC 2407 Query 39997 CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAAT 40056 | || ||||| ||||| |||||||| || || |||||||| | |||| | || Sbjct 2406 CAACAGGTTTTCCAAAACTATGCCATCACTGGCAGCGAAAAATGCTAGCACATATGAGAT 2347 Query 40057 AAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTAC 40116 || | ||| | | | | | ||||||| ||| |||||| || | ||| || Sbjct 2346 GAAGTGCCGTTCCCCAACTTTGAGCCGTTCCCAGTCAGTGAAATCTTTCGAAAGATCGAC 2287 Query 40117 TTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATA 40176 |||||| | ||||||||||| || | || || ||||| | |||||| || ||| Sbjct 2286 TTCTTCGGGCGTCCAAAACGAAGCGACCGCTTTCTTGTAGTATTGCCATATTTCGTCATA 2227 Query 40177 TTGTATTGGAAAAATAACAAATCTATTTGGATTT 40210 || || || | || ||||| | | | || ||| Sbjct 2226 CTGGATGGGTAGGATTACAAACCGAGTAGGGTTT 2193 >seq3632 Length=73641 Score = 131 bits (144), Expect = 2e-25 Identities = 407/634 (64%), Gaps = 41/634 (6%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| || ||||| |||||| || || || | ||| |||| || ||| |||||| || Sbjct 32174 GCAAGCAAAGTCCGTATGTAGACCTTCGTCGCGACTTATTAGCTCATTACTAAATGTTAG 32115 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 || ||||| || || ||||| || ||||| || || ||||||||| || || ||||| Sbjct 32114 ACCTGGCATCAGTCCCCGCTTCTTAAGCCAGAAGATTGCAGCAAAACTCCCGGAGAAGAA 32055 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT-- 39793 | ||||| ||||| ||| | || |||||||| || | ||| | | | | ||| Sbjct 32054 AACTCCTTCGACTGCAGCATAAGCCACAAGTCTTTCCGCA-AACGTCGA-CTTGGTGTCA 31997 Query 39794 ---ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850 ||||| ||| | ||||| | |||||| | ||||| || | | ||| Sbjct 31996 CCGATCCAGTTCAGCGCCCATTGAGCTTTGCGTTCCACACATTCCAGATTGCGGACTGCA 31937 Query 39851 TTAAAGAGATAATGTTTTT-------------------CA-----TCACT---------- 39876 ||||| ||| ||| | | || ||||| Sbjct 31936 TTAAATAGAAAATCCCTGTACAATAAACGACAATCAACCAGATGCTCACTTTTCTTTTGG 31877 Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||||| | |||||||||||| | |||| |||||||| || || | || || || || Sbjct 31876 ATCTTTGATATATGTATCTATAAGCAGAGAGTACATTTCGGAGTGTACATTCTCCATTGC 31817 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC 39996 ||||||| || || ||||| | ||||| | || ||||| ||| | |||| ||| Sbjct 31816 AATCTGAATGCCATAGAAACAACGAGCTTCTGCGATCTGTACTTCTTGGCTGAATCGTTC 31757 Query 39997 CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAAT 40056 | || ||||| ||||| |||||||| || || |||||||| | |||| | || Sbjct 31756 CAACAGGTTTTCCAAAACTATGCCATCACTGGCAGCGAAAAATGCTAGCACATATGAGAT 31697 Query 40057 AAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTAC 40116 || | ||| | | | | | ||||||| ||| |||||| || | ||| || Sbjct 31696 GAAGTGCCGTTCCCCAACTTTGAGCCGTTCCCAGTCAGTGAAATCTTTCGAAAGATCGAC 31637 Query 40117 TTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATA 40176 ||||||| | ||||||||||| || | || || ||||| | |||||| || ||| Sbjct 31636 TTCTTCAACCGTCCAAAACGAAGCGACCGCTTTCTTGTAGTATTGCCATATTTCGTCATA 31577 Query 40177 TTGTATTGGAAAAATAACAAATCTATTTGGATTT 40210 || || || | || ||||| | | | || ||| Sbjct 31576 CTGGATGGGTAGGATTACAAACCGAGTAGGGTTT 31543 >seq584 Length=457511 Score = 118 bits (130), Expect = 1e-21 Identities = 177/246 (72%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 69880 CCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATG 69939 || ||||| | || ||||| | ||||| |||| | || || || || || || ||| Sbjct 419676 CCACCTGCATTCTTTGAGATAACTGCACATTGTTTTAGCGTATCGTAGATGCCTTCGATG 419617 Query 69940 CTATCA-TCTATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCG 69997 ||||| ||| |||| ||||| ||||| ||||| |||| || | | || || | Sbjct 419616 CTATCGCTCT-TCATCGTTAACAAGAAG-CAGCTGGACAACTGTGGCTTCGGCGTCCCAG 419559 Query 69998 CATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTT 70057 |||| || || || || || |||||||||||||| || | ||| | || || ||||| | Sbjct 419558 CATTGAACAACGTCGGTGAGGCGTGAGTGAACCACTTCTGAGACATCAAATCATATGTCT 419499 Query 70058 CAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCT 70117 |||||||| ||| ||||| | ||||||||||| | || ||||||| |||||| | Sbjct 419498 CAATAGCTCCTTCAATATCATTCATATGAATTCCTACGGACACTCGCATCAGCATATGTT 419439 Query 70118 GAGGTC 70123 |||||| Sbjct 419438 GAGGTC 419433 Score = 102 bits (112), Expect = 1e-16 Identities = 127/173 (73%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 69277 GATGCTAGATTACAAACTGCTACCTCATTAG---AATTTGCATATTGTATTATCTCTGTA 69333 || || ||||||||||| |||| || | | || | ||||| | ||||| ||| Sbjct 424653 GAAGCAAGATTACAAACAGCTATTTCGTCGGGCGAACT---ATATTCGACAATCTCGGTA 424597 Query 69334 CATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCG 69393 || | || || |||||||| || ||||| ||||||||||| || || || || ||| Sbjct 424596 CACAAGTTGCTGCATTTGATTGTTCCCAGGTTTTGCTGATTGCTTTTGCGATTGCATGCG 424537 Query 69394 TCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGA 69446 || |||||||| || |||||| | || |||||||| || | || ||||||||| Sbjct 424536 TCTTTGTAAAGCATGAACGGATTCCCCGTTTCAATTTGGGCTTGGATAATAGA 424484 Score = 98.7 bits (108), Expect = 1e-15 Identities = 209/312 (67%), Gaps = 0/312 (0%) Strand=Plus/Minus Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548 ||| |||||||||| |||||| || || || || || |||||| || || | || Sbjct 424144 CTCATTTTCATATTTTGTATACAGAGCCTCAAACTCCTCCCCCCAACAGTCTTCAAGACC 424085 Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAA 69608 || || |||| |||| ||| || | ||| || ||| ||| | || || ||||||| Sbjct 424084 GGGGCACTCATGTGGATCCATAAACGTCCAATCAGCATTATCTTCCACGCGCCTCATAAA 424025 Query 69609 TAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGT 69668 | ||| || ||||| || || | ||| || || | | || | |||| || || || Sbjct 424024 CAAATCCGGTATCCACAGTGCAAGAAACAGGTCCCGTGCTCGAATTTCCTCGGCGCCGGT 423965 Query 69669 AttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 69728 ||||| | ||| | || | | || ||| | |||||||||||| || || | || Sbjct 423964 GTTTTTACGTAAATCAACGAATTGCTGAACATCCGGATGCCATGGTTCAAGGTACACGGC 423905 Query 69729 CATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGAC 69788 | | || || |||||||| || |||||||| | ||| | || || || || | || Sbjct 423904 GAAAGCACCGGGCCGTTTATTGCCACCCTGATCGACGTAGCGTGCGGTATTGTTGAACAC 423845 Query 69789 TCTCAGCATCGG 69800 || ||||| || Sbjct 423844 CCTGAGCATGGG 423833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686735716155120