Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2168 118 8e-22 >seq2168 Length=109785 Score = 118 bits (130), Expect = 8e-22 Identities = 229/336 (68%), Gaps = 4/336 (1%) Strand=Plus/Plus Query 43687 AAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAA 43746 ||| || || ||||||| | | || || || ||| | || ||||||||| ||||| Sbjct 2193 AAACCCTACTCGGTTTGTAATCCTACCCATCCAGTATGACGAAATATGGCAATACTACAA 2252 Query 43747 AAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACA 43806 ||||| || || |||||||| | |||||||| ||| | | ||||| || | | Sbjct 2253 GAAAGCGGTCGCTTCGTTTTGGACGCCCGAAGAAGTCGATCTTTCGAAAGATTTCACTGA 2312 Query 43807 TTGG--ATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTT 43864 ||| | || | ||| ||| || || || || | || | || ||||| Sbjct 2313 CTGGGAACGGC--TCAAAGTTGGGGAACGGCACTTCATCTCATATGTGCTAGCATTTTTC 2370 Query 43865 GCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAA 43924 ||||| || || || ||||| ||||| || | || || |||||||| || Sbjct 2371 GCTGCCAGTGATGGCATAGTTTTGGAAAACCTGTTGGAACGATTCAGCCAAGAAGTGCAG 2430 Query 43925 TTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAA 43984 | |||||||| || ||||| ||||| |||| || || | ||||| || || |||||| Sbjct 2431 ATCCCAGAAGCTCGTTGTTTCTATGGCATTCAGATCGCGTTTGAAAACATACACTCGGAA 2490 Query 43985 ATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 |||||| ||||||| |||||||| || ||||||||| Sbjct 2491 ATGTACTGTCTTCTCATAGATACATATATCAAAGAT 2526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397358354748790