Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq584 93.3 4e-14 seq3632 82.4 6e-11 >seq584 Length=457511 Score = 93.3 bits (102), Expect = 4e-14 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 131275 TTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTACACATATTGACGC 131334 ||| ||||||||||| |||| |||| | || ||||| ||| | | || || || Sbjct 424708 TTTATCGAAATCAAAGGTGCGCTTTTCCACGTCCACAAAATGACCAAGGGAAATGGAAGC 424649 Query 131335 CAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATT 131394 ||||||||||| || ||||||| | ||| | ||||| |||| ||||| || Sbjct 424648 AAGATTACAAACAGCTATTTCGTCGGGCGAACTATATTCGACAATCTCGGTACACAAGTT 424589 Query 131395 ACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATG-GTCCTTGT 131453 |||| || || || |||| ||||| ||||||||||| || | |||| ||| |||| Sbjct 424588 GCTGCATTTGATTGTTCCCAGGTTTTGCTGATTGCTTTT-GCGATTGCATGCGTCTTTGT 424530 Query 131454 ACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAAT 131496 | | |||| | || | |||||||| | ||| | || ||||| Sbjct 424529 AAAGCATGAACGGATTCCCCGTTTCAATTTGGGCTTGGATAAT 424487 >seq3632 Length=73641 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 108570 ATGTAATCCTTCGTCGCGACTTATGAGCTCGTTACTGAACGTCAAACCCGGCATAATACC 108629 ||||| ||||||||||||||||| ||||| ||||| || || | ||| ||||| | || Sbjct 32159 ATGTAGACCTTCGTCGCGACTTATTAGCTCATTACTAAATGTTAGACCTGGCATCAGTCC 32100 Query 108630 TTTCGTTTTAATGTAAAATATTGCCGCAAAACTGCCGGaaaaaaaTATTCCCTCGACAAT 108689 | | |||| | || ||||| |||||||| ||||| || || | ||| ||||| Sbjct 32099 CCGCTTCTTAAGCCAGAAGATTGCAGCAAAACTCCCGGAGAAGAAAACTCCTTCGACTGC 32040 Query 108690 TGCAAACGCAACCATTCTTT 108709 ||| | || || | ||||| Sbjct 32039 AGCATAAGCCACAAGTCTTT 32020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424830003975696