Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3632 86.0 8e-12 seq2168 86.0 8e-12 >seq3632 Length=73641 Score = 86.0 bits (94), Expect = 8e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || ||||| ||||||||||| |||||||| || || || |||||| ||||| Sbjct 32494 TAATCTCCAACCCGTTTCTCAAAGAAATTGGTCTTTCCCTCCAGAGAAATGTTCTCCATG 32435 Query 122431 AAGTCAAATGGATTCTTCGCGT 122452 |||||||||||||||| ||||| Sbjct 32434 AAGTCAAATGGATTCTCCGCGT 32413 >seq2168 Length=109785 Score = 86.0 bits (94), Expect = 8e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || ||||| ||||| |||| ||||| ||||||||||| || || |||||| ||||| Sbjct 3146 TAATCCCCAACCCGTCTCTCGAAGAAATTGGTCTTCCCCTCCAGAGAAATGTTCTCCATG 3087 Query 122431 AAGTCAAATGGATTCTTCGCGT 122452 |||||||||||||||| ||||| Sbjct 3086 AAGTCAAATGGATTCTCCGCGT 3065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627873751636800