Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq393 98.7 1e-15 seq2168 84.2 3e-11 >seq393 Length=352657 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 169325 GAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGA 169384 ||||| || ||||| ||| | || || || || ||||| |||||||||| ||| ||| Sbjct 19876 GAGGCCTCACGAACGTTCAGTAATTTGCCCCGTAGTGGGAAAACACCGTAGTTATCCCGA 19817 Query 169385 CCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATG 169444 ||||| || |||||| || ||||| || | || || ||||| |||||||| | |||| Sbjct 19816 CCAACAACACCGAGACCAGCTACTGCCAGGGATTTGGCTGAGTCTCCCTCGGTAAGGATG 19757 Query 169445 AGCGTACATTTTCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATA 169504 |||||||| || | | || || || ||||| ||||| ||||| || || || Sbjct 19756 AGCGTACAAGAAGATGAGTTTTTGGTGCCTGCATTGTTTGCATCGTCCAACTTAGGTATG 19697 Query 169505 CC 169506 || Sbjct 19696 CC 19695 >seq2168 Length=109785 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 95168 AGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGAAA 95227 ||||||||||||||||||||||||||||| || || |||||||| || |||||||| | Sbjct 3071 AGAATCCATTTGACTTCATGGAGAACATTTCTCTGGAGGGGAAGACCAATTTCTTCGAGA 3130 Query 95228 AGAGGGTTGGGGACTA 95243 |||||||||| || Sbjct 3131 GACGGGTTGGGGATTA 3146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583113832859920