Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq584 87.8 2e-12 >seq584 Length=457511 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 79693 TTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTC 79752 || ||||| ||||||||||| ||||| ||| |||||| | | || ||||||||| Sbjct 419643 TTTAGCGTATCGTAGATGCCTTCGATGCTATCGCTCTTCATCGTTAACAAGAAGCAGCTG 419584 Query 79753 GACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAAC 79812 |||| |||||| || ||| || || ||||| | ||||| | ||||| ||||| || Sbjct 419583 GACAACTGTGGCTTCGGCGTCCCAGCATTGAACAACGTCGGTGAGGCGTGAGTGAACCAC 419524 Query 79813 TTTTGGCTCATCAGATCGTACGTCTC 79838 || || ||||| ||| || ||||| Sbjct 419523 TTCTGAGACATCAAATCATATGTCTC 419498 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 19166 GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAAC 19225 |||||||| || ||||| ||||||| ||||| ||||| | ||||| | ||||| Sbjct 419498 GAGACATATGATTTGATGTCTCAGAAGTGGTTCACTCACGCCTCACCGACGTTGTTCAAT 419557 Query 19226 GCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGC 19285 || || ||| || || ||| |||| ||||| ||| | | | |||||| || ||| Sbjct 419558 GCTGGGACGCCGAAGCCACAGTTGTCCAGCTGCTTCTTGTTAACGATGAAGAGCGATAGC 419617 Query 19286 ATTGAGGGCATCTACGAGACGCTCAA 19311 || || ||||||||||| ||||| || Sbjct 419618 ATCGAAGGCATCTACGATACGCTAAA 419643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548386585463520