Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq393 87.8 2e-12 seq584 84.2 2e-11 >seq393 Length=352657 Score = 87.8 bits (96), Expect = 2e-12 Identities = 168/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || |||||||| || || ||||||||||| ||||||||||| | || ||| ||| || Sbjct 28192 CCTGTACCGATTCCATCGGCACCGTTGACTAGAATCATCGGGATGATCGGGCAGTACCAC 28133 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 || || || | || | ||||| || || ||| || | || ||| |||||| Sbjct 28132 TCAGGTTCGATACGTAAATTATCATCTCGCAAATAAGTCAGAATTGGATCGTCCGCCGGA 28073 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055 | ||| || || || | |||| ||| ||||| || || || | ||| ||| Sbjct 28072 TGGAAGATTAAACGGGTGACAGGATTCAGTGCGGTGAAAATATAACGAGCAGAGGCTGCA 28013 Query 152056 TCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 || |||||||| ||| ||||| |||||||| || |||| | || || | |||| Sbjct 28012 TCTTTGCCACCGCACAGACGCGTACCAAACTGACCGATGGGCAACAACAGATTCAAGTTG 27953 Query 152116 TTGGCGCC 152123 |||| ||| Sbjct 27952 TTGGAGCC 27945 >seq584 Length=457511 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 |||||| || || || ||| || |||| || || |||||| | || || ||||||| Sbjct 419497 TGAGACATATGATTTGATGTCTCAGAAGTGGTTCACTCACGCCTCACCGACGTTGTTCAA 419556 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 ||||| ||| | || ||| |||| ||||||||| || | |||||||| || Sbjct 419557 TGCTGGGACGCCGAAGCCACAGTTGTCCAGCTGCTTCTTGTTAACGATGAAGAGCGATAG 419616 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAG 53410 ||||| ||||||||||| ||||| || | ||||| ||||| ||| Sbjct 419617 CATCGAAGGCATCTACGATACGCTAAAACAATGTGCAGTTATCTCAAAG 419665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547078115248400