Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq2814 114 8e-21 seq6576 93.3 3e-14 >seq2814 Length=333951 Score = 114 bits (126), Expect = 8e-21 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| ||||| || | ||| | ||| |||||| || || || ||||| || Sbjct 221373 CCACCACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGAC 221314 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | || || || |||||||| || || |||||||| || || Sbjct 221313 AACGTACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGA 221254 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | |||||||||||| ||| || | ||| || | ||| || || | || ||||| Sbjct 221253 ATGCCCTCCTTGTCT-TGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGC-CTCCA 221196 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| |||||||| ||||| || ||||| |||||||| |||||||| Sbjct 221195 CTTCCAATGTTATCGTCTTACCAGTCAACGTCTTCACAAATATCTGCAT 221147 Score = 114 bits (126), Expect = 8e-21 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| ||||| || | ||| | ||| |||||| || || || ||||| || Sbjct 221601 CCACCACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGAC 221542 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | || || || |||||||| || || |||||||| || || Sbjct 221541 AACGTACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGA 221482 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | |||||||||||| ||| || | ||| || | ||| || || | || ||||| Sbjct 221481 ATGCCCTCCTTGTCT-TGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGC-CTCCA 221424 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| |||||||| ||||| || ||||| |||||||| |||||||| Sbjct 221423 CTTCCAATGTTATCGTCTTACCAGTCAACGTCTTCACAAATATCTGCAT 221375 >seq6576 Length=99650 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| ||||| || | ||| | ||| |||||| || || || ||||| || Sbjct 35476 CCACCACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGAC 35535 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | || || || |||||||| || || |||||||| || || Sbjct 35536 AACGTACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGA 35595 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCT-TCGCTCTCCA 34657 | || ||||||||| ||||| | ||| || | ||| || || | ||| || | Sbjct 35596 ATGCCTTCCTTGTCTTGAATCTTC-GCTTTCACATTCTCAATCGTATCGCTGGCT-TCTA 35653 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || ||||| || || ||||| ||||| ||||||||||| Sbjct 35654 CTTCAAGAGTGATGGTTTTCCCAGTCAACGTCTTCACGAAAATCTGCAT 35702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314652278608814