Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2814 158 1e-33 seq6576 143 2e-29 seq6840 141 8e-29 seq1875 140 3e-28 seq9259 100 2e-16 >seq2814 Length=333951 Score = 158 bits (174), Expect = 1e-33 Identities = 175/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| || ||| |||| || ||| | || ||||||||||| ||| | | Sbjct 220770 ATGCAGATATTTGTGAAGACTTTGACTGGGAAGACCATCACTCTTGAAGTAGAAGCCAGC 220829 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| |||| || ||| || ||||||||||| |||||||| ||||| || ||| Sbjct 220830 GATACGATCGAGAATGTGAAAGCGAAGATTCAAGACAAGGAAGGCATTCCACCAGACCAA 220889 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || || || |||| || || || || |||||||| | ||| |||| || |||||||| Sbjct 220890 CAACGATTGATATTTGCGGGGAAGCAGTTGGAAGA-TGGTCGTACGTTGTCTGATTACAA 220948 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || || ||| | |||||||| | || ||||| || Sbjct 220949 TATCCAGAAGGAGTCAACTTTGCATCTTGTTTTGCGACTTCGTGGTGGTAT 220999 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| || || |||| || ||| | || || | |||||||| | Sbjct 221147 ATGCAGATATTTGTGAAGACGTTGACTGGTAAGACGATAACATTGGAAGTGGAGGCTAGT 221206 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||||| || ||| || ||||||||||| || ||||| ||||| || ||| Sbjct 221207 GATACGATTGAGAATGTGAAAGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAA 221266 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || || || |||| || || || || |||||||| | ||| |||| || |||||||| Sbjct 221267 CAACGATTGATATTTGCGGGGAAGCAGTTGGAAGA-TGGTCGTACGTTGTCTGATTACAA 221325 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || || ||| | |||||||| | || ||||| || Sbjct 221326 TATCCAGAAGGAGTCAACTTTGCATCTTGTTTTGCGACTTCGTGGTGGTAT 221376 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| || || |||| || ||| | || || | |||||||| | Sbjct 221375 ATGCAGATATTTGTGAAGACGTTGACTGGTAAGACGATAACATTGGAAGTGGAGGCTAGT 221434 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||||| || ||| || ||||||||||| || ||||| ||||| || ||| Sbjct 221435 GATACGATTGAGAATGTGAAAGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAA 221494 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || || || |||| || || || || |||||||| | ||| |||| || |||||||| Sbjct 221495 CAACGATTGATATTTGCGGGGAAGCAGTTGGAAGA-TGGTCGTACGTTGTCTGATTACAA 221553 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || || ||| | |||||||| | || ||||| || Sbjct 221554 TATCCAGAAGGAGTCAACTTTGCATCTTGTTTTGCGACTTCGTGGTGGTAT 221604 >seq6576 Length=99650 Score = 143 bits (158), Expect = 2e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| || || | || ||||||||||| ||| | | Sbjct 35702 ATGCAGATTTTCGTGAAGACGTTGACTGGGAAAACCATCACTCTTGAAGTAGAAGCCAGC 35643 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||||| || ||| || ||||||||||| |||||||| ||||| || ||| Sbjct 35642 GATACGATTGAGAATGTGAAAGCGAAGATTCAAGACAAGGAAGGCATTCCACCAGACCAA 35583 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || || || |||| || || || || |||||||| | ||| |||| || |||||||| Sbjct 35582 CAACGATTGATATTTGCGGGGAAGCAGTTGGAAGA-TGGTCGTACGTTGTCTGATTACAA 35524 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || || ||| | |||||||| | || ||||| || Sbjct 35523 TATCCAGAAGGAGTCAACTTTGCATCTTGTTTTGCGACTTCGTGGTGGTAT 35473 Score = 104 bits (114), Expect = 2e-17 Identities = 123/164 (75%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 27052 CGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGC 27111 ||||||||| || ||| || ||||||||||| |||||||| ||||| || ||||| | Sbjct 31508 CGATTGAGAATGTGAAAGCGAAGATTCAAGACAAGGAAGGCATTCCACCAGACCAACAAC 31449 Query 27112 GTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAACATT 27170 | || |||| || || || || |||||||| | ||| |||| || |||||||| || Sbjct 31448 GATTGATATTTGCGGGGAAGCAGTTGGAAGA-TGGTCGTACGTTGTCTGATTACAATATC 31390 Query 27171 CAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || |||||||| || || ||| | || | ||| | || ||||| Sbjct 31389 CAGAAGGAGTCAACATTGCATCTCGTACTTCGTCTTCGTGGTGG 31346 >seq6840 Length=28952 Score = 141 bits (156), Expect = 8e-29 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || |||||||| | || ||||| || || || |||| Sbjct 19829 ATGCAAATTTTCGTGAAGACGCTTACCGGCAAAACGATCACTCTCGAGGTAGA---GTCC 19773 Query 27048 ---GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 || ||||||||| || ||| |||||||||||||||||||| || || || || Sbjct 19772 AGTGATACGATTGAGAACGTGAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCAGAC 19713 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || || ||| |||| | || ||||| || |||||||| | || | || || ||| Sbjct 19712 CAGCAACGTCTAATTTTTGCTGGCAAGCAGTTGGAAGATGGCCGTACTTTATCTGACTAC 19653 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| || || ||||| ||||||||||| ||||||||||| || ||||| Sbjct 19652 AACATCCAGAAAGAGTCAACCTTACATTTAGTTTTGCGTTTACGCGGTGG 19603 Score = 132 bits (146), Expect = 4e-26 Identities = 170/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || |||||||| | || ||||| || || || |||| Sbjct 20057 ATGCAGATCTTCGTGAAAACACTTACCGGCAAAACGATCACTCTCGAGGTAGA---GTCC 20001 Query 27048 ---GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 || ||||||||| || ||| |||||||||||||||||||| || || || || Sbjct 20000 AGTGATACGATTGAGAACGTGAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCAGAC 19941 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || || ||| |||| | || ||||| || |||||||| | || | || || ||| Sbjct 19940 CAGCAACGTCTAATTTTTGCTGGCAAGCAGTTGGAAGATGGCCGTACTTTATCTGACTAC 19881 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || || |||||||| |||| |||||| | ||| | || ||||| || Sbjct 19880 AACATCCAGAAAGAGTCGACTCTACACTTGGTTCTTCGTCTACGTGGTGGTAT 19828 >seq1875 Length=193106 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| || ||| |||| |||||| | || || || || |||||| | || Sbjct 184067 ATGCAGATATTTGTGAAGACTTTGACGGGCAAGACCATCACCCTAGAGGTGGAATCTTCG 184008 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| |||| || || || || || || |||||||| || || ||||| || Sbjct 184007 GATACGATCGAGAATGTGAAGGCTAAGATACAGGATAAAGAAGGAATTCCTCCCGACCAG 183948 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | |||||| || || ||||| || | || |||| |||||||| Sbjct 183947 CAGCGATTGATTTTCGCCGGGAAGCAGTTGGAGGATGGGAGAACTCTTTCGGATTACAAT 183888 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| ||||| | ||| ||||| |||| |||| ||||| || Sbjct 183887 ATTCAGAAGGAATCGACTCTCCATCTGGTTCTGCGCCTGCGCGGTGGAAT 183838 >seq9259 Length=16035 Score = 100 bits (110), Expect = 2e-16 Identities = 122/164 (74%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 27052 CGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGC 27111 ||||||||| || ||| || ||||||||||| || ||||| ||||| || ||||| | Sbjct 16004 CGATTGAGAATGTGAAAGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAACAAC 15945 Query 27112 GTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAACATT 27170 | || |||| || || || || |||||||| | ||| |||| || |||||||| || Sbjct 15944 GATTGATATTTGCGGGGAAGCAGTTGGAAGA-TGGTCGTACGTTGTCTGATTACAATATC 15886 Query 27171 CAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || |||||||| || || ||| | || | ||| | || ||||| Sbjct 15885 CAGAAGGAGTCAACATTGCATCTCGTACTTCGTCTTCGTGGTGG 15842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434808811436160