Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2038 82.4 7e-11 >seq2038 Length=246823 Score = 82.4 bits (90), Expect = 7e-11 Identities = 89/117 (76%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 6563 TAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGA 6622 |||||||| |||||||||| |||||||| | || || || || ||| | ||| Sbjct 141773 TAGATATGTGCATCCCCCATTGTATGCACAAATTCACCCGGTTTCAGTCCCGTCAGATGG 141832 Query 6623 GCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCAC-CCCTAACCC 6678 || |||||||| || || || || || ||||||||||||||||| || ||| ||||| Sbjct 141833 GCAATCATGTATGTAAGTAGTGCATAGCTAGCAATGTTGAACGGAACGCCCAAACCC 141889 Score = 82.4 bits (90), Expect = 7e-11 Identities = 89/117 (76%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 34667 GGGTTAGGG-GTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| ||| || ||||||||||||||||| || || || || || |||||||| || || Sbjct 141889 GGGTTTGGGCGTTCCGTTCAACATTGCTAGCTATGCACTACTTACATACATGATTGCCCA 141830 Query 34726 TGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTA 34782 | | ||| || || || || | |||||||| |||||||||| |||||||| Sbjct 141829 TCTGACGGGACTGAAACCGGGTGAATTTGTGCATACAATGGGGGATGCACATATCTA 141773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448149449081760