Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq6840 105 5e-18 >seq6840 Length=28952 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| ||||| || ||||| || ||| || || | || || || || Sbjct 19829 ATGCAAATTTTCGTGAAGACGCTTACCGGCAAAACGATCACTCTCGAGGTAGAGTCCAGT 19770 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || |||| | || || ||| ||||| |||||||||||| |||| || | Sbjct 19769 GATACGATTGAGAAC--GTGAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCAGACC 19712 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| |||||||||| || || || ||||| || | || | || || || |||| Sbjct 19711 AGCAACGTCTAATTTTTGCTGGCAAGCAGTTGGAAGATGGCCGTACTTTATCTGACTACA 19652 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| |||||| || || ||||| ||||||||||| || || || Sbjct 19651 ACATCCAGAAAGAGTCAACCTTACATTTAGTTTTGCGTTTACGCGGTGG 19603 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || |||||||| ||||| || ||| || || | || || || || Sbjct 20057 ATGCAGATCTTCGTGAAAACACTTACCGGCAAAACGATCACTCTCGAGGTAGAGTCCAGT 19998 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || |||| | || || ||| ||||| |||||||||||| |||| || | Sbjct 19997 GATACGATTGAGAAC--GTGAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCAGACC 19940 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| |||||||||| || || || ||||| || | || | || || || |||| Sbjct 19939 AGCAACGTCTAATTTTTGCTGGCAAGCAGTTGGAAGATGGCCGTACTTTATCTGACTACA 19880 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| |||||| ||| | || |||||| | ||| | ||||| || Sbjct 19879 ACATCCAGAAAGAGTCGACTCTACACTTGGTTCTTCGTCTACGTGGTGG 19831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355774973282466