Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2814 145 2e-29 seq6840 143 6e-29 seq6576 125 2e-23 seq9259 91.5 3e-13 >seq2814 Length=333951 Score = 145 bits (160), Expect = 2e-29 Identities = 167/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| | ||||| || | ||| ||||| || ||||| || ||||| | | || Sbjct 220991 ACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGT 220932 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| |||||| || || || || | ||||||||||| || |||| || Sbjct 220931 ACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCC 220872 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| || ||||| |||||| || ||||| || || | ||| || || || Sbjct 220871 TTCCTTGTCTTGAATCTTCGCTTTCACATTCTCGATCGTATCGCTGGCTTCTACTTCAAG 220812 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 |||||| ||||| || || | |||||| ||||| | |||||| || Sbjct 220811 AGTGATGGTCTTCCCAGTCAAAGTCTTCACAAATATCTGCATCTT 220767 Score = 120 bits (132), Expect = 7e-22 Identities = 162/223 (73%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| | ||||| || | ||| ||||| || ||||| || ||||| | | || Sbjct 221368 ACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGT 221309 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| |||||| || || || || | ||||||||||| || |||| || Sbjct 221308 ACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCC 221249 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCA-GAGCTTTCAACCTCGA 211071 |||||||| || ||||| |||||| || || || || ||| ||| || || || | Sbjct 221248 CTCCTTGTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGC-CTCCACTTCCA 221190 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| || || | ||||| ||||| | |||||| Sbjct 221189 ATGTTATCGTCTTACCAGTCAACGTCTTCACAAATATCTGCAT 221147 Score = 120 bits (132), Expect = 7e-22 Identities = 162/223 (73%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| | ||||| || | ||| ||||| || ||||| || ||||| | | || Sbjct 221596 ACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGT 221537 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| |||||| || || || || | ||||||||||| || |||| || Sbjct 221536 ACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCC 221477 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCA-GAGCTTTCAACCTCGA 211071 |||||||| || ||||| |||||| || || || || ||| ||| || || || | Sbjct 221476 CTCCTTGTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGC-CTCCACTTCCA 221418 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| || || | ||||| ||||| | |||||| Sbjct 221417 ATGTTATCGTCTTACCAGTCAACGTCTTCACAAATATCTGCAT 221375 >seq6840 Length=28952 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||| |||||||| |||||||| || || | | || | |||||| Sbjct 19846 AGAACCAAGTGTAGAGTCGACTCTTTCTGGATGTTGTAGTCAGATAAAGTACGGCCATCT 19905 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||||||| || || || || ||||| ||||| ||||||| ||||| ||||| Sbjct 19906 TCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCT 19965 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || ||||||||| || || || ||| | || ||||||||||||||||| Sbjct 19966 TGAATTTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCTACCTCGAGAGTGATCGTT 20025 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || || || | |||||| Sbjct 20026 TTGCCGGTAAGTGTTTTCACGAAGATCTGCAT 20057 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || |||||||| |||||||| || || | | || | |||||||||| ||||||||| Sbjct 19633 GTTGACTCTTTCTGGATGTTGTAGTCAGATAAAGTACGGCCATCTTCCAACTGCTTGCCA 19692 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || || || || ||||| ||||| ||||||| ||||| ||||| || || || |||| Sbjct 19693 GCAAAAATTAGACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTTGAATTTTGGCTTTC 19752 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||| || || || ||| | || ||||||||||||||||| || || || || ||| Sbjct 19753 ACGTTCTCAATCGTATCACTGGACTCTACCTCGAGAGTGATCGTTTTGCCGGTAAGCGTC 19812 Query 211098 TTTACAAACACCTGCAT 211114 || || || | ||||| Sbjct 19813 TTCACGAAAATTTGCAT 19829 >seq6576 Length=99650 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| | ||||| || | ||| ||||| || ||||| || ||||| | | || Sbjct 35481 ACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGT 35540 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| |||||| || || || || | ||||||||||| || |||| || Sbjct 35541 ACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCC 35600 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| || ||||| |||||| || || || || || | ||| || || || Sbjct 35601 TTCCTTGTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCGCTGGCTTCTACTTCAAG 35660 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| || || || || | ||||| || || | |||||| Sbjct 35661 AGTGATGGTTTTCCCAGTCAACGTCTTCACGAAAATCTGCAT 35702 Score = 96.9 bits (106), Expect = 8e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || || || | || ||||| || ||||| || ||||| | | || Sbjct 31351 ACGAAGACGAAGTACGAGATGCAATGTTGACTCCTTCTGGATATTGTAATCAGACAACGT 31410 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| |||||| || || || || | ||||||||||| || |||| || Sbjct 31411 ACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCC 31470 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCA 211055 ||||||||| || ||||| |||||| || || || || ||| Sbjct 31471 TTCCTTGTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCA 31513 >seq9259 Length=16035 Score = 91.5 bits (100), Expect = 3e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || || || | || ||||| || ||||| || ||||| | | || Sbjct 15847 ACGAAGACGAAGTACGAGATGCAATGTTGACTCCTTCTGGATATTGTAATCAGACAACGT 15906 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| |||||| || || || || | ||||||||||| || |||| || Sbjct 15907 ACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCC 15966 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCA 211055 |||||||| || ||||| |||||| || || || || ||| Sbjct 15967 CTCCTTGTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCA 16009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158852620741670