Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq6840 158 8e-34 seq6576 111 1e-19 >seq6840 Length=28952 Score = 158 bits (174), Expect = 8e-34 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || || || || || ||||||||||||||||| || || |||| Sbjct 19829 ATGCAAATTTTCGTGAAGACGCTTACCGGCAAAACGATCACTCTCGAGGTAGAGTCCAGT 19770 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | ||| |||||| |||||||||||| | || ||||| || Sbjct 19769 GATACGATTGAGAACGTGAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCAGACCAG 19710 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| |||| ||||| ||||| || ||||||| | || |||||| || |||||| Sbjct 19709 CAACGTCTAATTTTTGCTGGCAAGCAGTTGGAAGATGGCCGTACTTTATCTGACTACAAC 19650 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || || |||||||| || |||||||||||||| Sbjct 19649 ATCCAGAAAGAGTCAACCTTACATTTAGTTTT 19618 Score = 145 bits (160), Expect = 5e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| || || || ||||||||||||||||| || || |||| Sbjct 20057 ATGCAGATCTTCGTGAAAACACTTACCGGCAAAACGATCACTCTCGAGGTAGAGTCCAGT 19998 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | ||| |||||| |||||||||||| | || ||||| || Sbjct 19997 GATACGATTGAGAACGTGAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCAGACCAG 19938 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| |||| ||||| ||||| || ||||||| | || |||||| || |||||| Sbjct 19937 CAACGTCTAATTTTTGCTGGCAAGCAGTTGGAAGATGGCCGTACTTTATCTGACTACAAC 19878 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || |||||||| || |||| || ||| Sbjct 19877 ATCCAGAAAGAGTCGACTCTACACTTGGTT 19848 >seq6576 Length=99650 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || || ||||| |||||||| ||||| || ||| Sbjct 35702 ATGCAGATTTTCGTGAAGACGTTGACTGGGAAAACCATCACTCTTGAAGTAGAAGCCAGC 35643 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | ||| | || ||| ||||| ||||| | || ||||| || Sbjct 35642 GATACGATTGAGAATGTGAAAGC-GAAGATTCAAGACAAGGAAGGCATTCCACCAGACCA 35584 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| || || |||||||| || || || ||||||| | || || || |||||||| Sbjct 35583 ACAACGATTGATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTGATTACAA 35524 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || || || ||||| || || ||| | ||||| Sbjct 35523 TATCCAGAAGGAGTCAACTTTGCATCTTGTTTT 35491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337926559280264