Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1875 165 2e-35 seq2814 149 1e-30 seq6576 140 8e-28 seq6840 116 9e-21 seq19712 105 2e-17 seq9259 105 2e-17 >seq1875 Length=193106 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || || |||||||| ||||| || || | ||||||||| | | |||| Sbjct 183847 CGCAGGCGCAGAACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAATCCGAAAGAGTT 183906 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 |||||||| || | ||||||||| ||||| || | ||| || |||||||| ||||| ||| Sbjct 183907 CTCCCATCCTCCAACTGCTTCCCGGCGAAAATCAATCGCTGCTGGTCGGGAGGAATTCCT 183966 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || || || || ||||| ||||||| ||||| || || || | |||||| |||| Sbjct 183967 TCTTTATCCTGTATCTTAGCCTTCACATTCTCGATCGTATCCGAAGATTCCACCTCTAGG 184026 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| ||||||||||||||||| || Sbjct 184027 GTGATGGTCTTGCCCGTCAAAGTCTT 184052 >seq2814 Length=333951 Score = 149 bits (164), Expect = 1e-30 Identities = 168/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| || ||||| || | ||| || || || |||| ||||||||| | ||| || Sbjct 220991 ACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGT 220932 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | ||||||||| || || || | |||||||||||| || ||||| || Sbjct 220931 ACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCC 220872 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||| ||||| |||||| ||||| || || || ||| || || | Sbjct 220871 TTCCTTGTCTTGAATCTTCGCTTTCACATTCTCGATCGTATCGCTGGCTTCTACTTCAAG 220812 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||| || |||||||| || | || | ||||| || Sbjct 220811 AGTGATGGTCTTCCCAGTCAAAGTCTTCACAAATATCTGCATCTT 220767 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| || ||||| || | ||| || || || |||| ||||||||| | ||| || Sbjct 221368 ACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGT 221309 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | ||||||||| || || || | |||||||||||| || ||||| || Sbjct 221308 ACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCC 221249 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||| ||||| |||||| || || || || | ||||| || || Sbjct 221248 CTCCTTGTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCCACTTCCAA 221189 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 || |||||||| || ||||| || || Sbjct 221188 TGTTATCGTCTTACCAGTCAACGTCTT 221162 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| || ||||| || | ||| || || || |||| ||||||||| | ||| || Sbjct 221596 ACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGT 221537 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | ||||||||| || || || | |||||||||||| || ||||| || Sbjct 221536 ACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCC 221477 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||| ||||| |||||| || || || || | ||||| || || Sbjct 221476 CTCCTTGTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCCACTTCCAA 221417 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 || |||||||| || ||||| || || Sbjct 221416 TGTTATCGTCTTACCAGTCAACGTCTT 221390 Score = 95.1 bits (104), Expect = 3e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| || ||||| || | ||| || || || |||| ||||||||| | ||| || Sbjct 221140 ACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGT 221081 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | ||||||||| || || || | |||||||||||| || ||||| || Sbjct 221080 ACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCC 221021 >seq6576 Length=99650 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| || ||||| || | ||| || || || |||| ||||||||| | ||| || Sbjct 35481 ACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGT 35540 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | ||||||||| || || || | |||||||||||| || ||||| || Sbjct 35541 ACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCC 35600 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||| ||||| |||||| || || || || || ||| || || | Sbjct 35601 TTCCTTGTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCGCTGGCTTCTACTTCAAG 35660 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || || ||||| || || | ||| | ||||| Sbjct 35661 AGTGATGGTTTTCCCAGTCAACGTCTTCACGAAAATCTGCAT 35702 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || || || | || || || || |||| ||||||||| | ||| || Sbjct 31351 ACGAAGACGAAGTACGAGATGCAATGTTGACTCCTTCTGGATATTGTAATCAGACAACGT 31410 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | ||||||||| || || || | |||||||||||| || ||||| || Sbjct 31411 ACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCC 31470 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||| ||||| |||||| || || || || | ||||| ||||| Sbjct 31471 TTCCTTGTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCCACTTCTAA 31530 Query 225672 CGTGATCGTCT 225682 || ||||||| Sbjct 31531 TGTTATCGTCT 31541 >seq6840 Length=28952 Score = 116 bits (128), Expect = 9e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||| || ||||| |||| ||||| || | ||||| | |||||| Sbjct 19846 AGAACCAAGTGTAGAGTCGACTCTTTCTGGATGTTGTAGTCAGATAAAGTACGGCCATCT 19905 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| ||||| || || || ||||| ||||| || ||||||||||| |||||| Sbjct 19906 TCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCT 19965 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || || ||| || ||||| || || || || || || || || | |||||||| Sbjct 19966 TGAAT-TTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCTACCTCGAGAGTGATCGT 20024 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||||| | ||| | ||||| Sbjct 20025 TTTGCCGGTAAGTGTTTTCACGAAGATCTGCAT 20057 Score = 107 bits (118), Expect = 5e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || ||||| |||| ||||| || | ||||| | |||||||| | |||||| ||| Sbjct 19633 GTTGACTCTTTCTGGATGTTGTAGTCAGATAAAGTACGGCCATCTTCCAACTGCTTGCCA 19692 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 || || || || ||||| ||||| || ||||||||||| |||||||| || ||| || || Sbjct 19693 GCAAAAATTAGACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTTGAAT-TTTGGCTTT 19751 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| || || || || || || || || | |||||||| ||||| || | || Sbjct 19752 CACGTTCTCAATCGTATCACTGGACTCTACCTCGAGAGTGATCGTTTTGCCGGTAAGCGT 19811 Query 225696 TTTTATGAACACTTGCAT 225713 || | ||| | |||||| Sbjct 19812 CTTCACGAAAATTTGCAT 19829 >seq19712 Length=3212 Score = 105 bits (116), Expect = 2e-17 Identities = 107/138 (78%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784 || || |||| ||||||| |||| ||||| || ||||||||||||| |||||||||| Sbjct 2641 ATGTCAAGGGCTGGTAAGGTTCTGCGCGTTGCGTCGAATTAAACCACATGCTCCACCGCT 2582 Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGA 7844 | | | | |||||| || ||||||||||||| |||||| |||| | | |||| ||| Sbjct 2581 TGTGCGGGCCCCCGTCAATTCCTTTGAGTTTTAATCTTGCGACCGTACTCCCCAGGCGGA 2522 Query 7845 AT-ATTTACGCGTTAGCT 7861 || || | ||||||||| Sbjct 2521 ATGCTTAAAGCGTTAGCT 2504 Score = 104 bits (114), Expect = 6e-17 Identities = 93/113 (82%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||||||||||||| | ||||||||| || ||| | ||||| Sbjct 1966 TGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAAA-CTCCTACGGGAGGCAG 2024 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATGTTACGTGA 6878 |||||| ||||||| ||||||||||| |||| ||||| || ||| ||||| Sbjct 2025 CAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCATGCCGCGTGA 2077 >seq9259 Length=16035 Score = 105 bits (116), Expect = 2e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || || || | || || || || |||| ||||||||| | ||| || Sbjct 15847 ACGAAGACGAAGTACGAGATGCAATGTTGACTCCTTCTGGATATTGTAATCAGACAACGT 15906 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | ||||||||| || || || | |||||||||||| || ||||| || Sbjct 15907 ACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCC 15966 Query 225612 TTCCTTGTCTTGGATCTT 225629 ||||||||||| ||||| Sbjct 15967 CTCCTTGTCTTGAATCTT 15984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192223199749652