Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq6576 87.8 1e-12 seq6840 84.2 2e-11 seq2814 82.4 6e-11 >seq6576 Length=99650 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101036 TGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGT 101095 ||||||||||| || || || ||||||||||| | || || ||||||||| || Sbjct 35500 TGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCATCTTCCAACTGC 35559 Query 101096 TTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTT 101155 || |||||| |||| | | |||||||||| || | |||||| ||||| ||| || Sbjct 35560 TTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTC 35619 Query 101156 TGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCGTC 101215 |||||||| | | ||| || ||| | ||| | || || ||||| || ||| Sbjct 35620 GCTTTCACATTCTCAATCGTATCGCTGGCTTCTACTTCAAGAGTGATGGTTTTCCCAGTC 35679 Query 101216 AATGTTTTAATAAAAATTTGCAT 101238 || || || | ||||| ||||| Sbjct 35680 AACGTCTTCACGAAAATCTGCAT 35702 >seq6840 Length=28952 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/233 (68%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 101007 TATTG-CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAA 101065 ||||| || || || || | || || | || || ||||| ||||| || || ||||| Sbjct 19597 TATTGACCACCGCGTAAACGCAAAACTAAATGTAAGGTTGACTCTTTCTGGATGTTGTAG 19656 Query 101066 TCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCT 101125 || | | ||| | ||||||||| || ||||| ||| | || || | ||| |||||| Sbjct 19657 TCAGATAAAGTACGGCCATCTTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCT 19716 Query 101126 ACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGAC 101185 || | ||||||||||| |||||| |||||| | | | ||| || ||||| Sbjct 19717 GGAGGAATACCTTCTTTGTCTTGAATTTTGGCTTTCACGTTCTCAATCGTATCACTGGAC 19776 Query 101186 GTTGTTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 | |||| || || |||||||| || | || || | ||||||||||| Sbjct 19777 TCTACCTCGAGAGTGATCGTTTTGCCGGTAAGCGTCTTCACGAAAATTTGCAT 19829 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089 |||| ||| | ||| || ||||| || || ||||| || | | ||| | ||||||| Sbjct 19849 ACCAAGTGTAGAGTCGACTCTTTCTGGATGTTGTAGTCAGATAAAGTACGGCCATCTTCC 19908 Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCA 101149 || || ||||| ||| | || || | ||| |||||| || | ||||||||||| | Sbjct 19909 AACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTTGA 19968 Query 101150 ATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTG 101209 ||||| |||||| | | | ||| || ||||| | |||| || || |||||| Sbjct 19969 ATTTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCTACCTCGAGAGTGATCGTTTTG 20028 Query 101210 CCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || || | |||||| | || || ||||| Sbjct 20029 CCGGTAAGTGTTTTCACGAAGATCTGCAT 20057 >seq2814 Length=333951 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101036 TGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGT 101095 ||||||||||| || || || ||||||||||| | || || ||||||||| || Sbjct 220972 TGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCATCTTCCAACTGC 220913 Query 101096 TTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTT 101155 || |||||| |||| | | |||||||||| || | |||||| ||||| ||| || Sbjct 220912 TTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTC 220853 Query 101156 TGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCGTC 101215 |||||||| | | ||| || ||| | ||| | || || || || || ||| Sbjct 220852 GCTTTCACATTCTCGATCGTATCGCTGGCTTCTACTTCAAGAGTGATGGTCTTCCCAGTC 220793 Query 101216 AATGTTTTAATAAAAATTTGCAT 101238 || || || | ||| || ||||| Sbjct 220792 AAAGTCTTCACAAATATCTGCAT 220770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409560156326922