Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq3632 152 4e-32 seq2168 136 3e-27 >seq3632 Length=73641 Score = 152 bits (168), Expect = 4e-32 Identities = 235/333 (71%), Gaps = 2/333 (1%) Strand=Plus/Minus Query 4800 TTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATA 4859 ||||| ||| |||| ||||| || ||||| || || |||||||| || |||| | Sbjct 31887 TTTTCTTTTGGATCTTTGATATATGTATCTATAAGCAGAGAGTACATTTCGGAGTGTACA 31828 Query 4860 TTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTA 4919 || || || |||||||||| || || || || | |||||||| | || ||||| | Sbjct 31827 TTCTCCATTGCAATCTGAATGCCATAGAAACAACGAGCTTCTGCGATCTGTACTTCTTGG 31768 Query 4920 CAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAA 4979 | |||| ||| | | |||||| ||||| || |||||||| || ||||| || | Sbjct 31767 CTGAATCGTTCCAACAGGTTTTCCAAAACTATGCCATCACTGGCAGCGAAAAATGCTAGC 31708 Query 4980 ACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTA 5039 |||| || || |||| | |||| || || || || ||||| | |||||||| Sbjct 31707 ACATATGAGATGAAGTGCCGTTCCCCAACTTTGAGCCGTTCCCAGTCAGTGAAATCTTTC 31648 Query 5040 GTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTA-CATAGACCA 5098 | | ||| ||||||||||| ||||||||||| || ||||||| ||||| || | ||| Sbjct 31647 GAAAGATCGACTTCTTCAACCGTCCAAAACGAAGCGACCGCTTTCTTGTAGTATTG-CCA 31589 Query 5099 AATATCAGGATACTGAATCGGAAGTATGACAAA 5131 || || |||||| || || || || ||||| Sbjct 31588 TATTTCGTCATACTGGATGGGTAGGATTACAAA 31556 >seq2168 Length=109785 Score = 136 bits (150), Expect = 3e-27 Identities = 226/324 (70%), Gaps = 2/324 (1%) Strand=Plus/Minus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || |||| ||||| || ||||| || || | |||||||| || ||||| ||||| | Sbjct 2528 GGATCTTTGATATATGTATCTATGAGAAGACAGTACATTTCCGAGTGTATGTTTTCAAAC 2469 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTT 4928 || ||||||| || || || || | |||||||| | || ||||| | | |||| | Sbjct 2468 GCGATCTGAATGCCATAGAAACAACGAGCTTCTGGGATCTGCACTTCTTGGCTGAATCGT 2409 Query 4929 TCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGAT 4988 || | | |||||| ||||| || |||||||| || ||||| || | |||| || Sbjct 2408 TCCAACAGGTTTTCCAAAACTATGCCATCACTGGCAGCGAAAAATGCTAGCACATATGAG 2349 Query 4989 ATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCA 5048 || |||| | |||| || || || || ||||| | |||||||| | | ||| Sbjct 2348 ATGAAGTGCCGTTCCCCAACTTTGAGCCGTTCCCAGTCAGTGAAATCTTTCGAAAGATCG 2289 Query 5049 ACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTA-CATAGACCAAATATCAGG 5107 |||||||| ||||||||||| || ||||||| ||||| || | ||| || || Sbjct 2288 ACTTCTTCGGGCGTCCAAAACGAAGCGACCGCTTTCTTGTAGTATTG-CCATATTTCGTC 2230 Query 5108 ATACTGAATCGGAAGTATGACAAA 5131 |||||| || || || || ||||| Sbjct 2229 ATACTGGATGGGTAGGATTACAAA 2206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426944684322614