Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3632 134 2e-26 seq584 109 8e-19 >seq3632 Length=73641 Score = 134 bits (148), Expect = 2e-26 Identities = 239/346 (69%), Gaps = 2/346 (1%) Strand=Plus/Minus Query 48390 TTTTCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATA 48449 ||||| || |||||| | || |||||||| | ||| |||||||||||||| | | Sbjct 31887 TTTTCTTTTGGATCTTTGATATATGTATCTATAAGCAGAGAGTACATTTCGGAGTGTACA 31828 Query 48450 TTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTA 48509 || || ||||| ||||||| || || ||||| | ||||||| ||||||||| || Sbjct 31827 TTCTCCATTGCAATCTGAATGCCATAGAAACAACGAGCTTCTGCGATCTGTACTTCTTGG 31768 Query 48510 CAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAAT 48569 | |||||||| || || || ||||| |||||||| ||||| |||||||||| Sbjct 31767 CTGAATCGTTCCAACAGGTTTTCCAAAACTATGCCATCACTGGCAGCGAAAAATGCTAGC 31708 Query 48570 ACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTT 48629 |||| | || || | ||| | || | ||||||| ||| |||||| Sbjct 31707 ACATATGAGATGAAGTGCCGTTCCCCAACTTTGAGCCGTTCCCAGTCAGTGAAATCTTTC 31648 Query 48630 GATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATT-CCA 48688 || | ||| ||||||||| | |||||||| || || | ||||| || || |||| ||| Sbjct 31647 GAAAGATCGACTTCTTCAACCGTCCAAAACGAAGCGACCGCTTTCTTGTA-GTATTGCCA 31589 Query 48689 TATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTT 48734 ||| || || ||||| || | || ||||| | | | || ||| Sbjct 31588 TATTTCGTCATACTGGATGGGTAGGATTACAAACCGAGTAGGGTTT 31543 >seq584 Length=457511 Score = 109 bits (120), Expect = 8e-19 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 77682 ATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTA 77741 || || || ||||||||||| |||| || | | ||||| | ||||||||| Sbjct 424656 ATGGAAGCAAGATTACAAACAGCTATTTCGTCGGGCGAACTATATTCGACAATCTCGGTA 424597 Query 77742 CATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAG 77801 || | || || |||||||| || ||||| ||||| || ||||| || |||||||| | Sbjct 424596 CACAAGTTGCTGCATTTGATTGTTCCCAGGTTTTGCTGATTGCTTTTGCGATTGCATGCG 424537 Query 77802 TCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGA 77854 || || ||||| || |||||| |||| |||||||| || | || ||||||||| Sbjct 424536 TCTTTGTAAAGCATGAACGGATTCCCCGTTTCAATTTGGGCTTGGATAATAGA 424484 Score = 107 bits (118), Expect = 3e-18 Identities = 177/251 (71%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 78288 CCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATA 78347 || ||||| |||| || || | || || |||| | ||||||||||| || || || Sbjct 419676 CCACCTGCATTCTTTGAGATAACTGCACATTGTTTTAGCGTATCGTAGATGCCTTCGATG 419617 Query 78348 CTGTCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGC 78406 || || | |||| ||||| ||||| ||||| |||| || | | || || || Sbjct 419616 CTATCGCTCTTCATCGTTAACAAGAAG-CAGCTGGACAACTGTGGCTTCGGCGTCCCAGC 419558 Query 78407 ATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTC 78466 ||| || || ||||| || || || || ||||| || | ||| | | || ||||| || Sbjct 419557 ATTGAACAACGTCGGTGAGGCGTGAGTGAACCACTTCTGAGACATCAAATCATATGTCTC 419498 Query 78467 AATAGCTGATTCTATGTCC--CATTGATGAATTCCTACCGCTACACGCATCAACATATGC 78524 ||||||| ||| || || ||| |||||||||||| | || ||||||| |||||| Sbjct 419497 AATAGCTCCTTCAATATCATTCAT--ATGAATTCCTACGGACACTCGCATCAGCATATGT 419440 Query 78525 TGAGGTCTTTC 78535 |||||||| || Sbjct 419439 TGAGGTCTCTC 419429 Score = 98.7 bits (108), Expect = 1e-15 Identities = 206/307 (67%), Gaps = 0/307 (0%) Strand=Plus/Minus Query 77902 TTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGC 77961 ||||||||| ||||| || ||||| || || |||||| || || | || |||| Sbjct 424139 TTTCATATTTTGTATACAGAGCCTCAAACTCCTCCCCCCAACAGTCTTCAAGACCGGGGC 424080 Query 77962 ATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGAT 78021 | |||| ||| ||| || | ||| ||| ||| || | || || ||||||| | || Sbjct 424079 ACTCATGTGGATCCATAAACGTCCAATCAGCATTATCTTCCACGCGCCTCATAAACAAAT 424020 Query 78022 CAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCT 78081 | |||||||| || |||| ||| || || || | || | ||| || || || || | Sbjct 424019 CCGGTATCCACAGTGCAAGAAACAGGTCCCGTGCTCGAATTTCCTCGGCGCCGGTGTTTT 423960 Query 78082 TTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAA 78141 | | ||| | || | | || ||| | |||||||||||| || || | || | | Sbjct 423959 TACGTAAATCAACGAATTGCTGAACATCCGGATGCCATGGTTCAAGGTACACGGCGAAAG 423900 Query 78142 CTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCA 78201 | || || |||||||| || |||||||| | || | ||||| || || | || || | Sbjct 423899 CACCGGGCCGTTTATTGCCACCCTGATCGACGTAGCGTGCGGTATTGTTGAACACCCTGA 423840 Query 78202 ACATTGG 78208 ||| || Sbjct 423839 GCATGGG 423833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694493760829120