Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2168 138 2e-27 seq3632 123 4e-23 seq584 122 1e-22 >seq2168 Length=109785 Score = 138 bits (152), Expect = 2e-27 Identities = 233/335 (70%), Gaps = 2/335 (1%) Strand=Plus/Minus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||| | |||||||||||| | ||||| |||||||| || || |||||||||| || Sbjct 2526 ATCTTTGATATATGTATCTATGAGAAGACAGTACATTTCCGAGTGTATGTTTTCAAACGC 2467 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 ||||||| || || ||||| | ||||| | ||||| || ||| | |||||||| Sbjct 2466 GATCTGAATGCCATAGAAACAACGAGCTTCTGGGATCTGCACTTCTTGGCTGAATCGTTC 2407 Query 47010 AGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAAT 47069 ||| || || ||||| |||||||| ||||| |||||||| | |||| | || Sbjct 2406 CAACAGGTTTTCCAAAACTATGCCATCACTGGCAGCGAAAAATGCTAGCACATATGAGAT 2347 Query 47070 AAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTAC 47129 || | ||| | | || | ||||||| ||| |||||| || | ||| || Sbjct 2346 GAAGTGCCGTTCCCCAACTTTGAGCCGTTCCCAGTCAGTGAAATCTTTCGAAAGATCGAC 2287 Query 47130 TTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATT-CCATATATCACGAT 47188 |||||| | ||||| || || || | ||||| || || |||| |||||| || || Sbjct 2286 TTCTTCGGGCGTCCAAAACGAAGCGACCGCTTTCTTGTA-GTATTGCCATATTTCGTCAT 2228 Query 47189 ATTGGATCGGAAAAATAACAAATCTATTTGGATTT 47223 | ||||| || | || ||||| | | | || ||| Sbjct 2227 ACTGGATGGGTAGGATTACAAACCGAGTAGGGTTT 2193 >seq3632 Length=73641 Score = 123 bits (136), Expect = 4e-23 Identities = 230/335 (69%), Gaps = 2/335 (1%) Strand=Plus/Minus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||| | |||||||||||| | ||| |||||||| || || | || || || || Sbjct 31876 ATCTTTGATATATGTATCTATAAGCAGAGAGTACATTTCGGAGTGTACATTCTCCATTGC 31817 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 ||||||| || || ||||| | ||||| | |||||||| ||| | |||||||| Sbjct 31816 AATCTGAATGCCATAGAAACAACGAGCTTCTGCGATCTGTACTTCTTGGCTGAATCGTTC 31757 Query 47010 AGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAAT 47069 ||| || || ||||| |||||||| ||||| |||||||| | |||| | || Sbjct 31756 CAACAGGTTTTCCAAAACTATGCCATCACTGGCAGCGAAAAATGCTAGCACATATGAGAT 31697 Query 47070 AAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTAC 47129 || | ||| | | || | ||||||| ||| |||||| || | ||| || Sbjct 31696 GAAGTGCCGTTCCCCAACTTTGAGCCGTTCCCAGTCAGTGAAATCTTTCGAAAGATCGAC 31637 Query 47130 TTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATT-CCATATATCACGAT 47188 ||||||| | ||||| || || || | ||||| || || |||| |||||| || || Sbjct 31636 TTCTTCAACCGTCCAAAACGAAGCGACCGCTTTCTTGTA-GTATTGCCATATTTCGTCAT 31578 Query 47189 ATTGGATCGGAAAAATAACAAATCTATTTGGATTT 47223 | ||||| || | || ||||| | | | || ||| Sbjct 31577 ACTGGATGGGTAGGATTACAAACCGAGTAGGGTTT 31543 >seq584 Length=457511 Score = 122 bits (134), Expect = 1e-22 Identities = 178/247 (72%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 76883 CCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATA 76942 || ||||| | || ||||| | ||||| |||| | || || |||||||| || || Sbjct 419676 CCACCTGCATTCTTTGAGATAACTGCACATTGTTTTAGCGTATCGTAGATGCCTTCGATG 419617 Query 76943 CTATCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGC 77001 ||||| | |||| ||||| ||||| ||||| |||| || | | || || || Sbjct 419616 CTATCGCTCTTCATCGTTAACAAGAAG-CAGCTGGACAACTGTGGCTTCGGCGTCCCAGC 419558 Query 77002 ATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTC 77061 ||| ||||| || || || || ||||||||||| || | ||| | | || ||||| || Sbjct 419557 ATTGAACAACGTCGGTGAGGCGTGAGTGAACCACTTCTGAGACATCAAATCATATGTCTC 419498 Query 77062 AATAACTGCTTCTATATCC--CATTGATGAATTCCTACAGCGACACGCATCAACATATGC 77119 |||| || |||| ||||| ||| |||||||||||| | || ||||||| |||||| Sbjct 419497 AATAGCTCCTTCAATATCATTCAT--ATGAATTCCTACGGACACTCGCATCAGCATATGT 419440 Query 77120 TGAGGTC 77126 ||||||| Sbjct 419439 TGAGGTC 419433 Score = 105 bits (116), Expect = 1e-17 Identities = 184/268 (69%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 76497 TTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGAC 76556 ||||||||| |||||| | ||||| || || |||||| || || | ||| || | Sbjct 424139 TTTCATATTTTGTATACAGAGCCTCAAACTCCTCCCCCCAACAGTCTTCAAGACCGGGGC 424080 Query 76557 ATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGAT 76616 | |||| ||| ||| || | ||| ||| ||| || | || || ||||||| | || Sbjct 424079 ACTCATGTGGATCCATAAACGTCCAATCAGCATTATCTTCCACGCGCCTCATAAACAAAT 424020 Query 76617 CAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCT 76676 | |||||||| || |||| ||| || || || | || | ||| || || || || | Sbjct 424019 CCGGTATCCACAGTGCAAGAAACAGGTCCCGTGCTCGAATTTCCTCGGCGCCGGTGTTTT 423960 Query 76677 TTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAA 76736 | | ||| | ||| | | || ||| | |||||||||||| || || | || | | Sbjct 423959 TACGTAAATCAACGAATTGCTGAACATCCGGATGCCATGGTTCAAGGTACACGGCGAAAG 423900 Query 76737 CACCCGGTCGTTTATTACCTCCCTGATC 76764 |||| || |||||||| || |||||||| Sbjct 423899 CACCGGGCCGTTTATTGCCACCCTGATC 423872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712754758354560