Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq6840 113 1e-19 seq1875 104 5e-17 seq6576 102 2e-16 seq2814 98.7 2e-15 >seq6840 Length=28952 Score = 113 bits (124), Expect = 1e-19 Identities = 154/210 (73%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| |||||||| ||||||||||| || | |||||| | |||||||| | Sbjct 19851 CAAG-TGTAGAGTCGACTCTTTCTGGATGTTGTAGTCAGATAAAGTACGGCCATCTTCCA 19909 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || || || || | |||||||| | | || ||||| || ||||||| Sbjct 19910 ACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTTGAA 19969 Query 152017 TTTTTTGTTTGACAGTCTCTA-CG-CTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 |||| ||| || |||| | || | ||| | |||||| || ||||| || ||||| Sbjct 19970 TTTTGGCTTTCACGTTCTCAATCGTATCACTGGA--CTCTACCTCGAGAGTGATCGTTTT 20027 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || || |||||||||| |||||| Sbjct 20028 GCCGGTAAGTGTTTTCACGAAGATCTGCAT 20057 Score = 102 bits (112), Expect = 2e-16 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || |||||||| ||||||||||| || | |||||| | |||||||| | || || Sbjct 19633 GTTGACTCTTTCTGGATGTTGTAGTCAGATAAAGTACGGCCATCTTCCAACTGCTTGCCA 19692 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || || || | |||||||| | | || ||||| || ||||||||||| ||| Sbjct 19693 GCAAAAATTAGACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTTGAATTTTGGCTTTC 19752 Query 152028 ACAGTCTCTA-CG-CTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAG 152085 || |||| | || | ||| | |||||| || ||||| || |||||||| || || | Sbjct 19753 ACGTTCTCAATCGTATCACTGGA--CTCTACCTCGAGAGTGATCGTTTTGCCGGTAAGCG 19810 Query 152086 TCTTCACGAAGACCTGCAT 152104 |||||||||| | ||||| Sbjct 19811 TCTTCACGAAAATTTGCAT 19829 >seq1875 Length=193106 Score = 104 bits (114), Expect = 5e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| ||||| || || || || || |||||||| | | |||||||||||| Sbjct 183856 AGAACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAATCCGAAAGAGTTCTCCCATCC 183915 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||||||||||| || | | ||||||||| | | |||||||| || || Sbjct 183916 TCCAACTGCTTCCCGGCGAAAATCAATCGCTGCTGGTCGGGAGGAATTCCTTCTTTATCC 183975 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || ||| |||| | | || ||| || || || || || || || Sbjct 183976 TGTATCTTAGCCTTCACATTCTCGATCGTATCCGAAGATTCCACCTCTAGGGTGATGGTC 184035 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| | ||||||||| || | |||||| Sbjct 184036 TTGCCCGTCAAAGTCTTCACAAATATCTGCAT 184067 >seq6576 Length=99650 Score = 102 bits (112), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 12/215 (6%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 |||||||| | ||| ||||| || ||||| |||||||| | || || | |||||||| Sbjct 35494 ACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCATCTTCC 35553 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | ||||| || || || | | || ||||| | | || |||||||| |||||| Sbjct 35554 AACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCTTCCTTGTCTTGA 35613 Query 152016 ATTTTTTGTTTGACAGTCTCTA------CGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || || ||| ||| |||| | ||||| || |||||||||||||| || Sbjct 35614 ATCTTCGCTTTCACATTCTCAATCGTATCGCTGGCT------TCTACTTCAAGAGTGATG 35667 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || | ||||||||||| | |||||| Sbjct 35668 GTTTTCCCAGTCAACGTCTTCACGAAAATCTGCAT 35702 >seq2814 Length=333951 Score = 98.7 bits (108), Expect = 2e-15 Identities = 152/218 (70%), Gaps = 12/218 (6%) Strand=Plus/Minus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 |||||||| | ||| ||||| || ||||| |||||||| | || || | |||||||| Sbjct 220978 ACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCATCTTCC 220919 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | ||||| || || || | | || ||||| | | || |||||||| |||||| Sbjct 220918 AACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCTTCCTTGTCTTGA 220859 Query 152016 ATTTTTTGTTTGACAGTCTCTA------CGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || || ||| ||| |||| | ||||| || |||||||||||||| || Sbjct 220858 ATCTTCGCTTTCACATTCTCGATCGTATCGCTGGCT------TCTACTTCAAGAGTGATG 220805 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || | ||||||||| || | |||||| || Sbjct 220804 GTCTTCCCAGTCAAAGTCTTCACAAATATCTGCATCTT 220767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153522797654018