Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2814 172 1e-37 seq1875 158 3e-33 seq6576 154 3e-32 seq6840 141 2e-28 seq9259 125 1e-23 >seq2814 Length=333951 Score = 172 bits (190), Expect = 1e-37 Identities = 178/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | || ||||| || || || || ||||| ||||| |||| Sbjct 220997 ACCACCACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGA 220938 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||| || ||||| || | || ||||| ||||| ||||| ||||||||||| || Sbjct 220937 CAACGTACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGG 220878 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||||||||| ||||| ||||| || | ||||| || || ||||| || Sbjct 220877 AATGCCTTCCTTGTCTTGAATCTTCGCTTTCACATTCTCGATCGTATCGCTGGCTTCTAC 220818 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCA 283104 ||| |||||||| ||||| || ||||||||||| || ||||||||||| |||| Sbjct 220817 TTCAAGAGTGATGGTCTTCCCAGTCAAAGTCTTCACAAATATCTGCATCTTCA 220765 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | || ||||| || || || || ||||| ||||| |||| Sbjct 221374 ACCACCACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGA 221315 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||| || ||||| || | || ||||| ||||| ||||| ||||||||||| || Sbjct 221314 CAACGTACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGG 221255 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||||||||| ||||| ||||| || | || || || || ||| || || Sbjct 221254 AATGCCCTCCTTGTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCCAC 221195 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | || ||||||||||| ||||| ||||| || ||||||||||| Sbjct 221194 TTCCAATGTTATCGTCTTACCAGTCAACGTCTTCACAAATATCTGCAT 221147 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | || ||||| || || || || ||||| ||||| |||| Sbjct 221602 ACCACCACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGA 221543 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||| || ||||| || | || ||||| ||||| ||||| ||||||||||| || Sbjct 221542 CAACGTACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGG 221483 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||||||||| ||||| ||||| || | || || || || ||| || || Sbjct 221482 AATGCCCTCCTTGTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCCAC 221423 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | || ||||||||||| ||||| ||||| || ||||||||||| Sbjct 221422 TTCCAATGTTATCGTCTTACCAGTCAACGTCTTCACAAATATCTGCAT 221375 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 282999 TCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGA 283058 ||||||||||| ||||| ||||| || | || || || || ||| || ||||| | Sbjct 221703 TCCTTGTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCCACTTCCAAT 221644 Query 283059 GTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||||||||| ||||| ||||| || ||||||||||| Sbjct 221643 GTTATCGTCTTACCAGTCAACGTCTTCACAAATATCTGCAT 221603 >seq1875 Length=193106 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || |||||||| | || ||| || || || ||||| || | | Sbjct 183841 CCACCGCGCAGGCGCAGAACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAATCCGAA 183900 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | |||||||| | || |||||||| || ||||| || || ||||| ||| Sbjct 183901 AGAGTTCTCCCATCCTCCAACTGCTTCCCGGCGAAAATCAATCGCTGCTGGTCGGGAGGA 183960 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || || || || ||||| || || || | ||||| || ||||||| ||| || Sbjct 183961 ATTCCTTCTTTATCCTGTATCTTAGCCTTCACATTCTCGATCGTATCCGAAGATTCCACC 184020 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| |||||||||||||| || ||||||||||| Sbjct 184021 TCTAGGGTGATGGTCTTGCCCGTCAAAGTCTTCACAAATATCTGCAT 184067 >seq6576 Length=99650 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | || ||||| || || || || ||||| ||||| |||| Sbjct 35475 ACCACCACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGA 35534 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||| || ||||| || | || ||||| ||||| ||||| ||||||||||| || Sbjct 35535 CAACGTACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGG 35594 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||||||||| ||||| ||||| || | || || || || ||||| || Sbjct 35595 AATGCCTTCCTTGTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCGCTGGCTTCTAC 35654 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| |||||||| || || || ||||| ||||| ||||| |||||||| Sbjct 35655 TTCAAGAGTGATGGTTTTCCCAGTCAACGTCTTCACGAAAATCTGCAT 35702 Score = 129 bits (142), Expect = 1e-24 Identities = 146/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || |||||||| ||||| || || || || ||||| ||||| |||| Sbjct 31346 CCACCACGAAGACGAAGTACGAGATGCAATGTTGACTCCTTCTGGATATTGTAATCAGAC 31405 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | ||| || ||||| || | || ||||| ||||| ||||| ||||||||||| ||| Sbjct 31406 AACGTACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGA 31465 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||| ||||| ||||| || | || || || || ||| || ||| Sbjct 31466 ATGCCTTCCTTGTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCCACT 31525 Query 283053 TCGAGAGTGATCGTCT 283068 || | || ||||||| Sbjct 31526 TCTAATGTTATCGTCT 31541 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 282999 TCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGA 283058 ||||||||||| ||||| ||||| || | || || || || ||| || ||||| | Sbjct 35374 TCCTTGTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCCACTTCCAAT 35433 Query 283059 GTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||||||||| ||||| ||||| || ||||||||||| Sbjct 35434 GTTATCGTCTTACCAGTCAACGTCTTCACAAATATCTGCAT 35474 >seq6840 Length=28952 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| |||| |||| || ||||| |||||||||||||||| Sbjct 19830 ACCACCACGTAGACGAAGAACCAAGTGTAGAGTCGACTCTTTCTGGATGTTGTAGTCAGA 19889 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || |||||||| || | || || || ||||| || | |||||| ||||| || Sbjct 19890 TAAAGTACGGCCATCTTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGG 19949 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| || |||||||| || || ||||| ||| | || || || || | || || Sbjct 19950 AATACCTTCTTTGTCTTGAATTTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCTAC 20009 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||||||||| || || || | || || ||||| |||||||| Sbjct 20010 CTCGAGAGTGATCGTTTTGCCGGTAAGTGTTTTCACGAAGATCTGCAT 20057 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || | || | || | |||||| || ||||| |||||||||||||||| Sbjct 19602 ACCACCGCGTAAACGCAAAACTAAATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGA 19661 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || |||||||| || | || || || ||||| || | |||||| ||||| || Sbjct 19662 TAAAGTACGGCCATCTTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGG 19721 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| || |||||||| || || ||||| ||| | || || || || | || || Sbjct 19722 AATACCTTCTTTGTCTTGAATTTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCTAC 19781 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||||||||| || || || | ||||| ||||| || ||||| Sbjct 19782 CTCGAGAGTGATCGTTTTGCCGGTAAGCGTCTTCACGAAAATTTGCAT 19829 >seq9259 Length=16035 Score = 125 bits (138), Expect = 1e-23 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || |||||||| ||||| || || || || ||||| ||||| |||| Sbjct 15842 CCACCACGAAGACGAAGTACGAGATGCAATGTTGACTCCTTCTGGATATTGTAATCAGAC 15901 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | ||| || ||||| || | || ||||| ||||| ||||| ||||||||||| ||| Sbjct 15902 AACGTACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGA 15961 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||||||||| ||||| ||||| || | || || || || ||| || ||| Sbjct 15962 ATGCCCTCCTTGTCTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCCACT 16021 Query 283053 TC 283054 || Sbjct 16022 TC 16023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046468854087332