Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq3632 140 3e-28 seq2168 132 5e-26 >seq3632 Length=73641 Score = 140 bits (154), Expect = 3e-28 Identities = 468/732 (64%), Gaps = 40/732 (5%) Strand=Plus/Minus Query 23335 AAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATT 23394 || || | ||| || ||||| || | ||||||||||||||| | | |||| || || || Sbjct 32347 AACAGACGATCGGCAACAAACTCCACATATTGACACATCAATTTACAGTTCATGCCGATC 32288 Query 23395 AGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATT 23454 || | || || | |||||| | ||||| | | || | |||||||||||| || Sbjct 32287 AGACTGACGGGCAAAGCATCAGAGAAGAACTGATGCTCTACTTGAACAGCATCTTTCATG 32228 Query 23455 ATTTGAA-CAATAACTTCTTCACTAGGTGGATATT--TTAAATACTTAAACAATAAACAT 23511 ||| | || | | |||| ||| | | || ||| ||||| |||| | || Sbjct 32227 ATTGCTAGCACTCGTTCCTTCG--AGG-GCTTCTTCTTTATGTACTTGTACAACATGCAA 32171 Query 23512 GCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCT 23571 ||||| || |||||| ||||| || | ||| || | |||||| |||||||| ||| Sbjct 32170 GCAAAGTCCGTATGTAGACCTTCGTCGCGACTTATTAGCTCATTACTAAATGTTAGACCT 32111 Query 23572 GGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATA 23631 ||||| | ||| || || |||| ||| || ||||||||||| ||||| ||||||| Sbjct 32110 GGCATCAGTCCCCGCTTCTTAAGCCAGAAGATTGCAGCAAAACTCCCGGAGAAGAAAACT 32051 Query 23632 CCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATC 23691 || || || || ||| | |||||||| | | |||| || | || ||| ||| Sbjct 32050 CCTTCGACTGCAGCATAAGCCACAAGTCTTTCCGCAAACGTCGACTTGGTGTCACCGATC 31991 Query 23692 CAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAG 23751 || || | ||| | ||| || || ||||| || | | | ||| || || Sbjct 31990 CAGTTCAGCGCCCATTGAGCTTTGCGTTCCACACATTCCAGATTGCGGACTGCATTAAAT 31931 Query 23752 AGAAAA-----GT-----------------------------TTTTTCTTCATTATCTGT 23777 |||||| || ||||||| |||| | Sbjct 31930 AGAAAATCCCTGTACAATAAACGACAATCAACCAGATGCTCACTTTTCTTTTGGATCTTT 31871 Query 23778 TATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTG 23837 ||||||||||| || || | | |||||||| || || | ||| || || |||||||| Sbjct 31870 GATATATGTATCTATAAGCAGAGAGTACATTTCGGAGTGTACATTCTCCATTGCAATCTG 31811 Query 23838 AAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAA 23897 || ||||| ||||| | |||||| | | || || || | |||| || | Sbjct 31810 AATGCCATAGAAACAACGAGCTTCTGCGATCTGTACTTCTTGGCTGAATCGTTCCAACAG 31751 Query 23898 ATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATG 23957 ||||| ||| || |||||||| ||||| || || || || |||||| || || || Sbjct 31750 GTTTTCCAAAACTATGCCATCACTGGCAGCGAAAAATGCTAGCACATATGAGATGAAGTG 31691 Query 23958 TCTTTCATCAGTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATC 24017 | ||| || | | || ||| ||| | | |||||| || | ||| ||||| || Sbjct 31690 CCGTTCCCCAACTTTGAGCCGTTCCCAGTCAGTGAAATCTTTCGAAAGATCGACTTCTTC 31631 Query 24018 AACTGTCCAAAA 24029 ||| |||||||| Sbjct 31630 AACCGTCCAAAA 31619 >seq2168 Length=109785 Score = 132 bits (146), Expect = 5e-26 Identities = 462/725 (64%), Gaps = 42/725 (6%) Strand=Plus/Minus Query 23343 ATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAGTTTTAC 23402 ||| || | |||||| | ||| ||||||||||| | | |||| || || || || | || Sbjct 2989 ATCAGCAATAAATTCCACATACTGACACATCAATTTACAGTTCATGCCGATCAGACTGAC 2930 Query 23403 TGGAATCGCATCATATAAGAATA-GTTTTTCAATGGAAACAGCATCTTTAATTATTTGAA 23461 || | |||||| | |||||| || | || | | | |||||||||| || || | Sbjct 2929 GGGCAAAGCATCAGAGAAGAATTTGTGCTCCACTTGTA-CAGCATCTTTCATGAT---AG 2874 Query 23462 CAATAACTTCTTCACTAGGTGGATATTT---TAAATACTTAAACAATAAACATGCAAAAT 23518 | | ||| ||| | | || | || || ||||| |||| | || ||||| | Sbjct 2873 CTAGCACTCGTTCCTTCGAGGGCTTCTTCTTTATGTACTTGTACAACATGCAGGCAAAGT 2814 Query 23519 CACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTA 23578 | ||||||||| || |||| | | || | |||||| |||||||| |||||||| | Sbjct 2813 CCGTATGTAGGCCCTCGTCCCGAGTTATTAGCTCATTACTAAATGTTAGACCTGGCATCA 2754 Query 23579 ATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAA 23638 ||| || || |||| ||| || ||||||||||| ||||| ||||||| || || | Sbjct 2753 GTCCCCGCTTCTTAAGCCAGAAGATTGCAGCAAAACTCCCGGAGAAGAAAACTCCTTCGA 2694 Query 23639 CAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAttttt 23698 | || ||| | |||||||| | | |||| || | || ||| ||||| || Sbjct 2693 CCGCAGCATAAGCCACAAGTCTTTCCGCAAACGTCGACTTGGTGTCACCGATCCAGTTCA 2634 Query 23699 ttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAAAA- 23757 | ||| | ||| || || ||||| || | | |||||| || || |||||| Sbjct 2633 GCGCCCATTGAGCTTTGCGTTCCACACATTCCAGATTGCGAATTGCATTAAATAGAAAAT 2574 Query 23758 ---------------------------GTT------TTTTCTTCATTATCTGTTATATAT 23784 | | ||||||| |||| | |||||| Sbjct 2573 CCCTACACGAAAAACGACAGACAATAGGCTACTTACTTTTCTTTCGGATCTTTGATATAT 2514 Query 23785 GTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCA 23844 ||||| || || | || |||||||| || || || ||||||| || ||||||| ||| Sbjct 2513 GTATCTATGAGAAGACAGTACATTTCCGAGTGTATGTTTTCAAACGCGATCTGAATGCCA 2454 Query 23845 TAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCG 23904 || ||||| | |||||| | | || || || | |||| || | ||||| Sbjct 2453 TAGAAACAACGAGCTTCTGGGATCTGCACTTCTTGGCTGAATCGTTCCAACAGGTTTTCC 2394 Query 23905 TTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCA 23964 ||| || |||||||| ||||| || || || || |||||| || || || | ||| Sbjct 2393 AAAACTATGCCATCACTGGCAGCGAAAAATGCTAGCACATATGAGATGAAGTGCCGTTCC 2334 Query 23965 TCAGTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTC 24024 || | | || ||| ||| | | |||||| || | ||| ||||| || ||| Sbjct 2333 CCAACTTTGAGCCGTTCCCAGTCAGTGAAATCTTTCGAAAGATCGACTTCTTCGGGCGTC 2274 Query 24025 CAAAA 24029 ||||| Sbjct 2273 CAAAA 2269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521356598061200