Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1875 111 1e-19 seq6840 84.2 2e-11 seq6576 82.4 5e-11 >seq1875 Length=193106 Score = 111 bits (122), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 ||||| || | ||| | || ||||| || || || ||||| || || |||||||| Sbjct 183838 ATTCCACCGCGCAGGCGCAGAACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAATCC 183897 Query 44168 GC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | ||||| | | | || |||| |||||||||||| || ||||| |||||||| || | Sbjct 183898 GAAAGAGTT--CTCCCATCCTCCAACTGCTTCCCGGCGAAAATCAATCGCTGCTGGTCGG 183955 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATT 44285 ||| | ||||| || ||| |||||| ||||| | | || || || | |||| Sbjct 183956 GAGGAATTCCTTCTTTATCCTGTATCTTAGCCTTCACATTCTCGATCGTATCCGAAGATT 184015 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| | || || ||||| ||||| | |||||||| || || ||||| Sbjct 184016 CCACCTCTAGGGTGATGGTCTTGCCCGTCAAAGTCTTCACAAATATCTGCAT 184067 >seq6840 Length=28952 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||| || ||||||||||| || | | || | || |||| |||||| || ||||| Sbjct 19638 CTCTTTCTGGATGTTGTAGTCAGATAAAGTACGGCCATCTTCCAACTGCTTGCCAGCAAA 19697 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 || | ||| ||||| |||| ||| | |||||| || || || || |||| | || Sbjct 19698 AATTAGACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTTGAATTTTG-GCTTTCACGT 19756 Query 44266 TC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 || | || || || ||| || ||||| | || ||||| || || || || ||||||| Sbjct 19757 TCTCAATCGTATCACTGGACTCTACCTCGAGAGTGATCGTTTTGCCGGTAAGCGTCTTCA 19816 Query 44325 CGAAGATTTGCAT 44337 |||| |||||||| Sbjct 19817 CGAAAATTTGCAT 19829 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || || ||| || ||||||||||| || | | || | || ||| Sbjct 19849 ACCAAGTGTAGAGTCGACTCTTTCTGGATGTTGTAGTCAGATAAAGTACGGCCATCTTCC 19908 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| || ||||| || | ||| ||||| |||| ||| | |||||| || || Sbjct 19909 AACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTTGA 19968 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || || |||| | |||| | || || || ||| || ||||| | || ||||| || Sbjct 19969 ATTTTG-GCTTTCACGTTCTCAATCGTATCACTGGACTCTACCTCGAGAGTGATCGTTTT 20027 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || || ||||||||||| ||||| Sbjct 20028 GCCGGTAAGTGTTTTCACGAAGATCTGCAT 20057 >seq6576 Length=99650 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | |||| ||| || || || | || |||||| ||||| |||||||| Sbjct 35472 CATACCACCACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATC 35531 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | | || | || |||| ||||||||| ||||| ||||| || || || |||| Sbjct 35532 AGACAACGTACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGG 35591 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| || |||||| |||| | ||| | || || ||| || || Sbjct 35592 TGGAATGCCTTCCTTGTCTTGAATCTTC-GCTTTCACATTCTCAATCGTATCGCTGGCTT 35650 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || | || || || || || || | ||||||||||| || ||||| Sbjct 35651 CTACTTCAAGAGTGATGGTTTTCCCAGTCAACGTCTTCACGAAAATCTGCAT 35702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359901959133486