Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq6840 149 2e-30 seq1875 149 2e-30 seq6576 127 5e-24 seq2814 122 2e-22 >seq6840 Length=28952 Score = 149 bits (164), Expect = 2e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || || || || ||||||||||| |||||||| || | || Sbjct 19826 CAAATTTTCGTGAAGACGCTTACCGGCAAAACGATCACTCTCGAGGTAGAGTCCAGTGAT 19767 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| || ||||| ||||||||||| || ||||| ||||||||| Sbjct 19766 ACGATTGAGAACGTGAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCAGACCAGCAA 19707 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || || ||| | |||||||| | ||| | | || || ||| || Sbjct 19706 CGTCTAATTTTTGCTGGCAAGCAGTTGGAAGATGGCCGTACTTTATCTGACTACAACATC 19647 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || ||||| ||||| | ||| | |||||| Sbjct 19646 CAGAAAGAGTCAACCTTACATTTAGTTTTG 19617 Score = 138 bits (152), Expect = 3e-27 Identities = 156/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| || || || ||||||||||| |||||||| || | || Sbjct 20054 CAGATCTTCGTGAAAACACTTACCGGCAAAACGATCACTCTCGAGGTAGAGTCCAGTGAT 19995 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| || ||||| ||||||||||| || ||||| ||||||||| Sbjct 19994 ACGATTGAGAACGTGAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCAGACCAGCAA 19935 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || || ||| | |||||||| | ||| | | || || ||| || Sbjct 19934 CGTCTAATTTTTGCTGGCAAGCAGTTGGAAGATGGCCGTACTTTATCTGACTACAACATC 19875 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || ||||| || || || || |||| || Sbjct 19874 CAGAAAGAGTCGACTCTACA-CTTGGTT 19848 >seq1875 Length=193106 Score = 149 bits (164), Expect = 2e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| ||| | || || || || |||||||| ||||||||| || || Sbjct 184064 CAGATATTTGTGAAGACTTTGACGGGCAAGACCATCACCCTAGAGGTGGAATCTTCGGAT 184005 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || ||||| ||||| ||||||||||| ||||| |||||||| Sbjct 184004 ACGATCGAGAATGTGAAGGCTAAGATACAGGATAAAGAAGGAATTCCTCCCGACCAGCAG 183945 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || |||||||| || ||| | || ||||| || |||||| | ||||| || | Sbjct 183944 CGATTGATTTTCGCCGGGAAGCAGTTGGAGGATGGGAGAACTCTTTCGGATTACAATATT 183885 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || ||||| || || ||||| ||| || Sbjct 183884 CAGAAGGAATCGACTCTCCATCTGGTTCTG 183855 >seq6576 Length=99650 Score = 127 bits (140), Expect = 5e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || | || || ||||| ||||| || || || ||| | || Sbjct 35699 CAGATTTTCGTGAAGACGTTGACTGGGAAAACCATCACTCTTGAAGTAGAAGCCAGCGAT 35640 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| |||||||| ||||| ||||| || || || ||||| ||| Sbjct 35639 ACGATTGAGAATGTGAAAGCGAAGATTCAAGACAAGGAAGGCATTCCACCAGACCAACAA 35580 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || || || || || ||| | |||||||| | || | | ||||| || || Sbjct 35579 CGATTGATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTGATTACAATATC 35520 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || || ||||| |||||||||||||| |||| Sbjct 35519 CAGAAGGAGTCAACTTTGCATCTTGTTTTGCGACT 35485 >seq2814 Length=333951 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| ||| | || || || || ||||| || || || ||| | || Sbjct 220773 CAGATATTTGTGAAGACTTTGACTGGGAAGACCATCACTCTTGAAGTAGAAGCCAGCGAT 220832 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || ||| |||||||| ||||| ||||| || || || ||||| ||| Sbjct 220833 ACGATCGAGAATGTGAAAGCGAAGATTCAAGACAAGGAAGGCATTCCACCAGACCAACAA 220892 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || || || || || ||| | |||||||| | || | | ||||| || || Sbjct 220893 CGATTGATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTGATTACAATATC 220952 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || || ||||| |||||||||||||| |||| Sbjct 220953 CAGAAGGAGTCAACTTTGCATCTTGTTTTGCGACT 220987 Score = 104 bits (114), Expect = 6e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA-GA 177982 || || || ||||| || | || || || ||||| || | || ||||| ||| || Sbjct 221150 CAGATATTTGTGAAGACGTTGACTGGTAAGACGATAACATTGGAAGTGGAG-GCTAGTGA 221208 Query 177983 CACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || || ||||| || ||| |||||||| ||||| || || || || || ||||| || Sbjct 221209 TACGATTGAGAATGTGAAAGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAACA 221268 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 |||| | || || || || || ||| | |||||||| | || | | ||||| || | Sbjct 221269 ACGATTGATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTGATTACAATAT 221328 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||| || || ||||| |||||||||||||| |||| Sbjct 221329 CCAGAAGGAGTCAACTTTGCATCTTGTTTTGCGACT 221364 Score = 104 bits (114), Expect = 6e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA-GA 177982 || || || ||||| || | || || || ||||| || | || ||||| ||| || Sbjct 221378 CAGATATTTGTGAAGACGTTGACTGGTAAGACGATAACATTGGAAGTGGAG-GCTAGTGA 221436 Query 177983 CACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || || ||||| || ||| |||||||| ||||| || || || || || ||||| || Sbjct 221437 TACGATTGAGAATGTGAAAGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAACA 221496 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 |||| | || || || || || ||| | |||||||| | || | | ||||| || | Sbjct 221497 ACGATTGATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTGATTACAATAT 221556 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||| || || ||||| |||||||||||||| |||| Sbjct 221557 CCAGAAGGAGTCAACTTTGCATCTTGTTTTGCGACT 221592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203420307076652