Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Girardia_20tigrina_20[genbank_20GCA_5F001938485.1_202017-01-06] 255,254 sequences; 1,428,149,015 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq217494 122 9e-23 seq213618 82.4 8e-11 seq211385 82.4 8e-11 seq101120 82.4 8e-11 seq12314 82.4 8e-11 >seq217494 Length=14875 Score = 122 bits (134), Expect = 9e-23 Identities = 171/235 (73%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 17241 TATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGT 17300 ||||||| | || |||||| || ||||| |||||||||||||| ||||| || | Sbjct 3256 TATCGATCAATATCGAGTACATCTCCGAGTGAATGTTCTCCATGGCGATCTGGAAGGAAT 3197 Query 17301 AAAA-GCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAA-TCGTTCCGCTAGATTTTC 17358 |||| || || | ||||| |||| |||||| | ||| || || ||| | ||||| || Sbjct 3196 AAAACGCCTCCG-CTTCCAGCATTTTAACTTC-ATGTATAAATCTCTCCACGAGATTCTC 3139 Query 17359 GTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTC 17418 ||||||||||||||| ||||| || ||||||||||| | ||| |||||| ||||| || Sbjct 3138 GTTCACGATGCCGTCACTCGCCGCAAAAAACGCCAACACATGAGAAATGAAGTATTTCTC 3079 Query 17419 GTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCG 17473 | | || | | ||||| | |||||| |||| || ||||||||| Sbjct 3078 ATTTGCGGTCAATA------AGTCCCATTTATCTTTCGATAAATTGACTTCTTCG 3030 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 16948 ATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTC 17007 || ||||||||||| || ||||| || || || | ||||||||||||||||| || || Sbjct 7254 ATATTTAAACATCAAGCAAGCGAAGTCACAGTGGAGGCCCTCGTCTCTGCTGATCAGCTC 7195 Query 17008 GTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAA 17067 || || | || |||||| ||| |||||||| | ||||||||| | |||||| Sbjct 7194 ATTGCTGAAGCAAAGACCTGGCATCAATCCGCGTTTCTTCAGCCAAAATATTGAGGCGAA 7135 Query 17068 CGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCG 17115 ||| ||||| || || || |||| ||||| || | || ||| Sbjct 7134 GCTGCCACTGAAGAAGATCCCTTCCACGGCAGCAAAAGCAACTACTCG 7087 >seq213618 Length=17143 Score = 82.4 bits (90), Expect = 8e-11 Identities = 91/119 (76%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 16793 AATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA 16852 |||| ||| || ||||| || || |||||||||||||| || |||||||| || | | Sbjct 389 AATCGATCTGCCACAAACTCGATGTATTGGCACATTAAATCTTCATTCATTCCGATTA-A 331 Query 16853 CGT-ACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAA 16910 | | ||||| | ||||||||| || || || ||||| ||||| |||||||| |||| Sbjct 330 CATAACCGGTAAAGCTTCCGTTAAGAACTCTTTTTCTATGACAACAGCTTCCTTGATAA 272 >seq211385 Length=3642 Score = 82.4 bits (90), Expect = 8e-11 Identities = 91/119 (76%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 16793 AATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA 16852 |||| ||| || ||||| || || |||||||||||||| || |||||||| || | | Sbjct 2634 AATCGATCTGCCACAAACTCGATGTATTGGCACATTAAATCTTCATTCATTCCGATTA-A 2576 Query 16853 CGT-ACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAA 16910 | | ||||| | ||||||||| || || || ||||| ||||| |||||||| |||| Sbjct 2575 CATAACCGGTAAAGCTTCCGTTAAGAACTCTTTTTCTATGACAACAGCTTCCTTGATAA 2517 >seq101120 Length=1587 Score = 82.4 bits (90), Expect = 8e-11 Identities = 91/119 (76%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 16793 AATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA 16852 |||| ||| || ||||| || || |||||||||||||| || |||||||| || | | Sbjct 1199 AATCGATCTGCCACAAACTCGATGTATTGGCACATTAAATCTTCATTCATTCCGATTA-A 1257 Query 16853 CGT-ACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAA 16910 | | ||||| | ||||||||| || || || ||||| ||||| |||||||| |||| Sbjct 1258 CATAACCGGTAAAGCTTCCGTTAAGAACTCTTTTTCTATGACAACAGCTTCCTTGATAA 1316 >seq12314 Length=2576 Score = 82.4 bits (90), Expect = 8e-11 Identities = 91/119 (76%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 16793 AATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA 16852 |||| ||| || ||||| || || |||||||||||||| || |||||||| || | | Sbjct 1009 AATCGATCTGCCACAAACTCGATGTATTGGCACATTAAATCTTCATTCATTCCGATTA-A 1067 Query 16853 CGT-ACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAA 16910 | | ||||| | ||||||||| || || || ||||| ||||| |||||||| |||| Sbjct 1068 CATAACCGGTAAAGCTTCCGTTAAGAACTCTTTTTCTATGACAACAGCTTCCTTGATAA 1126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515894280192720