Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Girardia_20tigrina_20[genbank_20GCA_5F001938485.1_202017-01-06] 255,254 sequences; 1,428,149,015 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq217494 104 2e-17 seq247670 91.5 2e-13 seq243336 91.5 2e-13 seq201504 91.5 2e-13 seq109119 82.4 8e-11 >seq217494 Length=14875 Score = 104 bits (114), Expect = 2e-17 Identities = 134/180 (74%), Gaps = 4/180 (2%) Strand=Plus/Minus Query 16479 TATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCAT 16538 |||| |||| || |||||| || ||||| |||||||| ||||| ||||| || || Sbjct 3256 TATCGATCAATATCGAGTACATCTCCGAGTGAATGTTCTCCATGGCGATCTGGAAGGAAT 3197 Query 16539 AGAA-GCATCGAGCCTCCGCTATTTGTACTTCCACGTA-AAATCGTTCCGCCAGGTTCTC 16596 | || || || || ||| |||| ||||| | ||| ||||| ||| | || ||||| Sbjct 3196 AAAACGCCTCC-GCTTCCAGCATTTTAACTTC-ATGTATAAATCTCTCCACGAGATTCTC 3139 Query 16597 ATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTC 16656 |||||||| |||||||| || |||||||||||||| | || |||||| ||||| || Sbjct 3138 GTTCACGATGCCGTCACTCGCCGCAAAAAACGCCAACACATGAGAAATGAAGTATTTCTC 3079 >seq247670 Length=3146 Score = 91.5 bits (100), Expect = 2e-13 Identities = 200/291 (69%), Gaps = 14/291 (5%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTG--TACATTTCTGAGTGTATGTTCTCTATGGCTATCT 16529 || || |||||||||| | || |||||||| || || | || || || ||||| | Sbjct 921 ATGTAAGTATCAATCA--ACTTTGAATACATTTCCGAATGAACATTTTCCATCGCTATTT 978 Query 16530 GAAATCCATAGAA-GCATCGAGCCTCCGCTATTTGTACTTCCACGTA-AAATCGTTCCGC 16587 | || | || || || || || |||| |||| ||||||| ||| ||||| ||| || Sbjct 979 GGAAACTGTAAAAAGCTTCT-GCTTCCGGCATTTTTACTTCCT-GTAGAAATCTTTCTGC 1036 Query 16588 CAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 || |||||||| ||||| || ||||| || ||||||||||| | || || |||||| Sbjct 1037 AAGATTCTCATTGACGATTCCATCACTGGCCGCAAAAAACGCAAGTACATGTGAAATGAA 1096 Query 16648 ATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTC 16707 ||| | | || || || | | | | |||| ||| ||| || ||| | ||| Sbjct 1097 ATACTGCTGATCCGACGTTA-ATTCGTTCCATCT-----ATCCTTGTTTAAATCGATTTC 1150 Query 16708 TTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATC 16758 ||| |||||||| | | || |||| || |||||||| ||||||| Sbjct 1151 TTCAACTGTCCAAAAAGAATCAACAGCCTGTTCATACATTTGAAAAATATC 1201 >seq243336 Length=1505 Score = 91.5 bits (100), Expect = 2e-13 Identities = 200/291 (69%), Gaps = 14/291 (5%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTG--TACATTTCTGAGTGTATGTTCTCTATGGCTATCT 16529 || || |||||||||| | || |||||||| || || | || || || ||||| | Sbjct 8 ATGTAAGTATCAATCA--ACTTTGAATACATTTCCGAATGAACATTTTCCATCGCTATTT 65 Query 16530 GAAATCCATAGAA-GCATCGAGCCTCCGCTATTTGTACTTCCACGTA-AAATCGTTCCGC 16587 | || | || || || || || |||| |||| ||||||| ||| ||||| ||| || Sbjct 66 GGAAACTGTAAAAAGCTTCT-GCTTCCGGCATTTTTACTTCCT-GTAGAAATCTTTCTGC 123 Query 16588 CAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 || |||||||| ||||| || ||||| || ||||||||||| | || || |||||| Sbjct 124 AAGATTCTCATTGACGATTCCATCACTGGCCGCAAAAAACGCAAGTACATGTGAAATGAA 183 Query 16648 ATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTC 16707 ||| | | || || || | | | | |||| ||| ||| || ||| | ||| Sbjct 184 ATACTGCTGATCCGACGTTA-ATTCGTTCCATCT-----ATCCTTGTTTAAATCGATTTC 237 Query 16708 TTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATC 16758 ||| |||||||| | | || |||| || |||||||| ||||||| Sbjct 238 TTCAACTGTCCAAAAAGAATCAACAGCCTGTTCATACATTTGAAAAATATC 288 >seq201504 Length=1836 Score = 91.5 bits (100), Expect = 2e-13 Identities = 200/291 (69%), Gaps = 14/291 (5%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTG--TACATTTCTGAGTGTATGTTCTCTATGGCTATCT 16529 || || |||||||||| | || |||||||| || || | || || || ||||| | Sbjct 597 ATGTAAGTATCAATCA--ACTTTGAATACATTTCCGAATGAACATTTTCCATCGCTATTT 540 Query 16530 GAAATCCATAGAA-GCATCGAGCCTCCGCTATTTGTACTTCCACGTA-AAATCGTTCCGC 16587 | || | || || || || || |||| |||| ||||||| ||| ||||| ||| || Sbjct 539 GGAAACTGTAAAAAGCTTCT-GCTTCCGGCATTTTTACTTCCT-GTAGAAATCTTTCTGC 482 Query 16588 CAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 || |||||||| ||||| || ||||| || ||||||||||| | || || |||||| Sbjct 481 AAGATTCTCATTGACGATTCCATCACTGGCCGCAAAAAACGCAAGTACATGTGAAATGAA 422 Query 16648 ATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTC 16707 ||| | | || || || | | | | |||| ||| ||| || ||| | ||| Sbjct 421 ATACTGCTGATCCGACGTTA-ATTCGTTCCATCT-----ATCCTTGTTTAAATCGATTTC 368 Query 16708 TTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATC 16758 ||| |||||||| | | || |||| || |||||||| ||||||| Sbjct 367 TTCAACTGTCCAAAAAGAATCAACAGCCTGTTCATACATTTGAAAAATATC 317 >seq109119 Length=3051 Score = 82.4 bits (90), Expect = 8e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 119102 TCCATTCCAGTAtttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGT 119161 ||||||| | |||||| || ||||| ||||| | || | | ||||||||||||||||| | Sbjct 1536 TCCATTCTAATATTTTCTTCGCCCAATACATTCTTAGAAATCCGTGCATTTTACCCTCTT 1595 Query 119162 TAATCATCTGAAGTTGTGCGGTGTTCCATAGAGGATCGTGTGT 119204 ||| |||||| | ||| || | ||||||| ||| ||||| Sbjct 1596 TAACCATCTGCAATTGAGCAGCATTCCATAACTTATCATGTGT 1638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509782642859280