Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Girardia_20tigrina_20[genbank_20GCA_5F001938485.1_202017-01-06] 255,254 sequences; 1,428,149,015 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq230650 228 1e-54 >seq230650 Length=142828 Score = 228 bits (252), Expect = 1e-54 Identities = 432/628 (69%), Gaps = 16/628 (3%) Strand=Plus/Plus Query 145540 ACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTCCTCC 145599 || ||||||||||||| ||| || || || | ||| |||| | ||||||||| Sbjct 94500 ACGGCCATCTCCATGGAGATTTTCGGATGAGGATCGTAATCCTCGATAATAAAGTCCTC- 94558 Query 145600 GCCCTGAA-GTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCTGGGAAAGGGCCG 145658 | ||||| ||| || ||||| ||| ||| | | | |||| |||||||| || | Sbjct 94559 GTACTGAAAGTCTTCAATGTCTGTCACGGATCTCCGAAACTTGAGTCTGGGAAACGGTCT 94618 Query 145659 GGGGCTC-CTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGT 145717 || ||| || ||| ||| | || | ||||||||||| | |||||||||||||| Sbjct 94619 CGG-CTCTCTCTTCATCTGCGTCGACAAAGCGTCCACGTGGTTCAAGTAGACGTGCGCGT 94677 Query 145718 CCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGG 145777 |||| || ||| || | ||||||| | | | ||||||| |||||| |||||| || Sbjct 94678 CCCCGAGCGAGTGAATCAGCGCCCCGGGTTTGTGTCCCGTGACGTGGGCAACCATGCGGG 94737 Query 145778 TCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCT 145837 |||| | | || ||||| || ||||| |||||||| ||||||||||| | || | || Sbjct 94738 TCAGTATCGCATAACTGGCGATATTGAACGGCACCCCGAGCCCCATGTCAGCGGACCTCT 94797 Query 145838 GGTACAGCTGGCAGGAGAGCTCCCC----GCCCG--CCACGTAGAACTGGCACAGGAGGT 145891 |||||| || ||| || | || | || || | || | |||||| ||| || Sbjct 94798 GGTACAACTTGCACGACAAATCGTCGGAGGCGCGGTCGACATGGAACTGCATCAGACAGT 94857 Query 145892 GGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCC 145951 |||| || ||||| |||||| |||| || |||||||||||| | | | || Sbjct 94858 GGCACGGAGGCAGCGCCATGAGCGGCACATCGCGCGGGTTCCAGGCCACCACCAGGTGCG 94917 Query 145952 TCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCT 146011 || | | || || ||| |||| | |||| || || ||||||||| | |||| Sbjct 94918 TCTCGGTGTCCGGATTCTCGCGGATCGATCTAATCACGTGCCCGAGCTGGTCGAATCCCT 94977 Query 146012 GCCCCCGGTAATCTGT---CTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGA 146068 | || |||||| || ||| ||| |||| |||||||||| || |||||||||| Sbjct 94978 GGCCGGTGTAATCGGTGCGCTT---GTCGCGGTACTCGGCCCCGAAATGTCTCCACTGGA 95034 Query 146069 ACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGA 146128 ||||||| || ||||| || || || || |||| ||||| |||||| | | |||| Sbjct 95035 ACCCGTACACCGGCCCGAGATCGCCCGGTTCCCGATGCCCGAGCCCGCGACTCTCCAGGA 95094 Query 146129 AGTCCCGGGACCCGTTGGCGTCCCAGAT 146156 | || | ||||| |||||||| || Sbjct 95095 ACTCTTTGCTGCCGTTCGCGTCCCAAAT 95122 Score = 100 bits (110), Expect = 3e-16 Identities = 214/312 (69%), Gaps = 7/312 (2%) Strand=Plus/Minus Query 145537 TAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTCC 145596 || || | ||||||||||| ||| || ||| || | || |||| | ||||||| Sbjct 56176 TACACGGACATCTCCATGGAGATTTTCGGGTGAGGATCATAATCCTCGATAATAAAGTCC 56117 Query 145597 TCCGCCCTGAA-GTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCTGGGAAAGGG 145655 || | ||||| ||| | ||||| ||| ||| | | | |||| || ||||| || Sbjct 56116 TC-GTACTGAATGTCTTAAATGTCTGTCACGGATCTCCGAAACTTGAGTCTTGGAAACGG 56058 Query 145656 CCGGGGGCTC-CTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCG 145714 | || ||| || ||| ||| | | | ||||||||||| || |||||||||| Sbjct 56057 TCTCGG-CTCTCTCTTCATCTGCGTCGATAAAGCGTCCACGTGGTTTAG-TAGACGTGCG 56000 Query 145715 CGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGT 145774 |||| || || ||| || | || |||| | | | ||||||| ||||||||||||| Sbjct 55999 CGTCTCCGAGA--GTGAATCAGCGCCACGGGTTTGTGTCCCGTGACGTGGGCGACCATGC 55942 Query 145775 AGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGC 145834 |||||| | | ||| ||||| || || || || |||| |||||||| | | || | Sbjct 55941 GGGTCAGTATCGCGTAACTGGCGATATTAAACGGTACCCTGAGCCCCATATAAGCGGACC 55882 Query 145835 GCTGGTACAGCT 145846 |||||||| || Sbjct 55881 TCTGGTACAACT 55870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588194056706160