Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Girardia_20tigrina_20[genbank_20GCA_5F001938485.1_202017-01-06] 255,254 sequences; 1,428,149,015 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq142428 86.0 5e-12 seq41141 84.2 2e-11 seq236085 82.4 6e-11 seq217462 82.4 6e-11 seq117779 82.4 6e-11 seq42647 82.4 6e-11 >seq142428 Length=13224 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| |||| ||| || | |||| ||| | |||| ||||| || ||||| ||||||| Sbjct 9367 TCCTCCTCTCAGTCTCAAAACCAAATGGAGAGTGCTTTCCTTCTGGATGTTGTAGTCCGA 9426 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 || ||| || ||||||||| ||||||||| || | || | | ||| || || || Sbjct 9427 GAGTGTTCGGCCGTCCTCCAACTGTTTGCCAGCGAAGATCAAACGCTGTTGATCAGGCGG 9486 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | |||||||||||| ||| || ||| || | ||| || || | | ||| Sbjct 9487 TATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTTTCGATGGTGTCCGCCGACTCAAC 9546 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCA 21174 || | || || || || || |||| ||||| || |||||||||| Sbjct 9547 GTCGAGCGTTATTGTTTTACCCGTTAGGGTTTTAACGAATATTTGCA 9593 >seq41141 Length=3971 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/212 (69%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 20967 ACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCC 21026 |||| ||| | ||| || ||||| || ||||| || || || | | || || ||| Sbjct 2550 ACCAAATGGAGAGTCGATTCCTTCTGTATGTTGTAATCACTCAA---TCGAGCATCTTCC 2494 Query 21027 AGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCG 21086 | |||||| || ||| | || | ||||||||||||| || ||||||||||| || | Sbjct 2493 AACTGTTTCCCGGCAAATATTAATCTCTGCTGGTCCGGAGGAACGCCTTCCTTATCTTGG 2434 Query 21087 ATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTG 21146 ||||| ||| || | | | | ||| || ||| || | || || || || Sbjct 2433 ATCTTCGCTTTGACGTTCTCTATTTTGTCATTGGACTCGACATCGAACGTTATCGTTTTA 2374 Query 21147 CCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | ||||||||| ||||||||||| ||||| Sbjct 2373 CCTGCTAACGTTTTAACAAATATTTGAATTTT 2342 >seq236085 Length=31588 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 20967 ACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCC 21026 |||| ||| | ||| || |||||||||||||| || || || ||| | | || || Sbjct 8380 ACCAAATGGAGAGTCGATTCCTTTTGAATGTTGTAATCGCTCAACGTTCGTCCATCTTCG 8439 Query 21027 AGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCG 21086 |||||||| || || | || | || |||||| || || || |||| |||||| | Sbjct 8440 AGCTGTTTCCCGGCGAAGATCAATCGCTGCTGATCGGGAGGGACCCCTTTCTTGTCCTGG 8499 Query 21087 ATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTG 21146 ||||| || || | | | ||||| | || ||| |||| || || || || Sbjct 8500 ATCTTCGCCTTGACGTTCTCTATCGTATCGCTGGACTCGACCTCCAAAGTTATTGTTTTC 8559 Query 21147 CCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || || | ||| || |||||||||||||||||| Sbjct 8560 CCTGTAAGCGTCTTAACAAATATTTGCATTTTG 8592 >seq217462 Length=8853 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20967 ACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCC 21026 |||| ||| | ||| || |||||||||||||| || || || ||| | | || || Sbjct 3601 ACCAAATGGAGAGTCGATTCCTTTTGAATGTTGTAATCGCTCAACGTTCGTCCATCTTCA 3542 Query 21027 AGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCG 21086 |||||||| || || | || | || || ||| || || | ||||||||||| | Sbjct 3541 AGCTGTTTCCCGGCGAATATCAATCGCTTCTGATCGGGAGGGATCCCTTCCTTGTCCTGG 3482 Query 21087 ATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTG 21146 ||||| || || | | | || |||| || ||| |||| || || || || Sbjct 3481 ATCTTCGCCTTRACGTTCTCTATCGTGTCACTGGACTCGACCTCCAAAGTTATTGTTTTC 3422 Query 21147 CCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || || | ||| ||||||||||||||||||||| Sbjct 3421 CCTGTAAGCGTCTTGACAAATATTTGCATTTTG 3389 >seq117779 Length=1033 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20967 ACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCC 21026 |||| ||| | ||| || |||||||||||||| || || || ||| | | || || Sbjct 251 ACCAAATGGAGAGTCGATTCCTTTTGAATGTTGTAATCGCTCAACGTTCGTCCATCTTCA 192 Query 21027 AGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCG 21086 |||||||| || || | || | || || ||| || || | ||||||||||| | Sbjct 191 AGCTGTTTCCCGGCGAATATCAATCGCTTCTGATCGGGAGGGATCCCTTCCTTGTCCTGG 132 Query 21087 ATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTG 21146 ||||| || || | | | || |||| || ||| |||| || || || || Sbjct 131 ATCTTCGCCTTAACGTTCTCTATCGTGTCACTGGACTCGACCTCCAAAGTTATTGTTTTC 72 Query 21147 CCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || || | ||| ||||||||||||||||||||| Sbjct 71 CCTGTAAGCGTCTTGACAAATATTTGCATTTTG 39 >seq42647 Length=1030 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 20967 ACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCC 21026 |||| ||| | ||| || |||||||||||||| || || || ||| | | || || Sbjct 783 ACCAAATGGAGAGTCGATTCCTTTTGAATGTTGTAATCGCTCAACGTTCGTCCATCTTCA 842 Query 21027 AGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCG 21086 |||||||| || || | || | || || ||| || || | ||||||||||| | Sbjct 843 AGCTGTTTCCCGGCGAATATCAATCGCTTCTGATCGGGAGGGATCCCTTCCTTGTCCTGG 902 Query 21087 ATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTG 21146 ||||| || || | | | || |||| || ||| |||| || || || || Sbjct 903 ATCTTCGCCTTGACGTTCTCTATCGTGTCACTGGACTCGACCTCCAAAGTTATTGTTTTC 962 Query 21147 CCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || || | ||| ||||||||||||||||||||| Sbjct 963 CCTGTAAGCGTCTTGACAAATATTTGCATTTTG 995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420945590423864