Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Girardia_20tigrina_20[genbank_20GCA_5F001938485.1_202017-01-06] 255,254 sequences; 1,428,149,015 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq211385 159 3e-34 seq12314 156 4e-33 seq247670 134 1e-26 seq201504 134 1e-26 seq243336 132 4e-26 seq238864 89.7 5e-13 seq217494 87.8 2e-12 >seq211385 Length=3642 Score = 159 bits (176), Expect = 3e-34 Identities = 205/279 (73%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 16504 AATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTG 16563 |||||||| ||| || | | ||||||||||||||||||||| ||||||||||| || Sbjct 2068 AATATAAGAATCAATCAACAGTGAATACATTTCTGAATGAATATTTTCCATTGCTATTTG 2009 Query 16564 AAAACCATAAAA-GCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTA 16622 |||| ||||| || ||| ||||| | |||| |||||| ||| |||||||| | Sbjct 2008 GAAACTGTAAAAAGCTTCT-GCTTCCGGCATTTTTACTTCTTTCAGAAATCTTTCTGCCA 1950 Query 16623 AGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAt 16682 | ||||| |||||||||||||| || ||||| ||||| ||||| | || ||| |||| Sbjct 1949 AATTTTCATTAACTATTCCATCACTGGCTGCGAAAAAGGCAAGGACATGCGAAATGAAAT 1890 Query 16683 ttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTT 16742 || ||| || | ||||||| || | |||||| || |||| | |||| Sbjct 1889 GTTGTTC---TTCCG---GTTTTAAGTCGTTCCATCTATCTTTCGACAAATTTATTTCTT 1836 Query 16743 CTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTT 16781 | || |||||||| ||| ||| ||| | ||||||||||| Sbjct 1835 CAACTGTCCAAAAGGAATCAAGAGCGTGTTTATACATTT 1797 >seq12314 Length=2576 Score = 156 bits (172), Expect = 4e-33 Identities = 190/255 (75%), Gaps = 8/255 (3%) Strand=Plus/Plus Query 16528 ATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCAT-AAAAGCATCTAGCTT 16586 ||||||||||||||||||||| ||||||||||| || |||| | |||||| ||| |||| Sbjct 1599 ATACATTTCTGAATGAATATTTTCCATTGCTATTTGGAAACTGTAAAAAGCTTCT-GCTT 1657 Query 16587 CGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGC 16646 | | |||| |||||| ||| |||||||| || ||||| |||||||||||||| | Sbjct 1658 CCGGCATTTTTACTTCTTTCAGAAATCTTTCTGCCAAATTTTCATTAACTATTCCATCAC 1717 Query 16647 TAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTA 16706 | ||||| ||||| ||||| | || ||| |||| || ||| || | |||||| Sbjct 1718 TGGCTGCGAAAAAGGCAAGGACATGCGAAATGAAATGTTGTTC---TTCCG---GTTTTA 1771 Query 16707 ACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAG 16766 | || | |||||| || |||| | ||||| || |||||||| ||| ||| || Sbjct 1772 AGTCGTTCCATCTATCTTTCGACAAATTTATTTCTTCAACTGTCCAAAAGGAATCAAGAG 1831 Query 16767 CCTTTTTATACATTT 16781 | | ||||||||||| Sbjct 1832 CGTGTTTATACATTT 1846 >seq247670 Length=3146 Score = 134 bits (148), Expect = 1e-26 Identities = 216/302 (72%), Gaps = 19/302 (6%) Strand=Plus/Plus Query 16486 TTTTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACT----ATACATTTCTGAAT 16541 ||||||| | | ||| ||| |||||||| || | ||| ||||||||| |||| Sbjct 903 TTTTTCTCTTC-ATCAGTAATGTAAGTATCAATCA----ACTTTGAATACATTTCCGAAT 957 Query 16542 GAATATTCTCCATTGCTATCTGAAAACCATAAAA-GCATCTAGCTTCGGATATTTGTACT 16600 ||| ||| ||||| ||||| || |||| ||||| || ||| ||||| | |||| |||| Sbjct 958 GAACATTTTCCATCGCTATTTGGAAACTGTAAAAAGCTTCT-GCTTCCGGCATTTTTACT 1016 Query 16601 TCAGAGTA-AAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAA 16659 || ||| ||| |||||||| | || || || || |||||||| || || |||||||| Sbjct 1017 TCCT-GTAGAAATCTTTCTGCAAGATTCTCATTGACGATTCCATCACTGGCCGCAAAAAA 1075 Query 16660 CGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAA 16719 |||||||| ||| ||| ||| | | | ||| || |||| || | Sbjct 1076 CGCAAGTACATGTGAAATGAAA---TACTGCTGATCCGA---CGTTAATTCGTTCCATCT 1129 Query 16720 ATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACAT 16779 ||| || |||||||| ||||| || |||||||||||| ||||||||| || |||||| Sbjct 1130 ATCCTTGTTTAAATCGATTTCTTCAACTGTCCAAAAAGAATCAACAGCCTGTTCATACAT 1189 Query 16780 TT 16781 || Sbjct 1190 TT 1191 >seq201504 Length=1836 Score = 134 bits (148), Expect = 1e-26 Identities = 216/302 (72%), Gaps = 19/302 (6%) Strand=Plus/Minus Query 16486 TTTTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACT----ATACATTTCTGAAT 16541 ||||||| | | ||| ||| |||||||| || | ||| ||||||||| |||| Sbjct 615 TTTTTCTCTTC-ATCAGTAATGTAAGTATCAATCA----ACTTTGAATACATTTCCGAAT 561 Query 16542 GAATATTCTCCATTGCTATCTGAAAACCATAAAA-GCATCTAGCTTCGGATATTTGTACT 16600 ||| ||| ||||| ||||| || |||| ||||| || ||| ||||| | |||| |||| Sbjct 560 GAACATTTTCCATCGCTATTTGGAAACTGTAAAAAGCTTCT-GCTTCCGGCATTTTTACT 502 Query 16601 TCAGAGTA-AAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAA 16659 || ||| ||| |||||||| | || || || || |||||||| || || |||||||| Sbjct 501 TCCT-GTAGAAATCTTTCTGCAAGATTCTCATTGACGATTCCATCACTGGCCGCAAAAAA 443 Query 16660 CGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAA 16719 |||||||| ||| ||| ||| | | | ||| || |||| || | Sbjct 442 CGCAAGTACATGTGAAATGAAA---TACTGCTGATCCGA---CGTTAATTCGTTCCATCT 389 Query 16720 ATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACAT 16779 ||| || |||||||| ||||| || |||||||||||| ||||||||| || |||||| Sbjct 388 ATCCTTGTTTAAATCGATTTCTTCAACTGTCCAAAAAGAATCAACAGCCTGTTCATACAT 329 Query 16780 TT 16781 || Sbjct 328 TT 327 >seq243336 Length=1505 Score = 132 bits (146), Expect = 4e-26 Identities = 187/256 (73%), Gaps = 10/256 (4%) Strand=Plus/Plus Query 16528 ATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAA-GCATCTAGCTT 16586 ||||||||| ||||||| ||| ||||| ||||| || |||| ||||| || ||| |||| Sbjct 31 ATACATTTCCGAATGAACATTTTCCATCGCTATTTGGAAACTGTAAAAAGCTTCT-GCTT 89 Query 16587 CGGATATTTGTACTTCAGAGTA-AAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCG 16645 | | |||| |||||| ||| ||| |||||||| | || || || || |||||||| Sbjct 90 CCGGCATTTTTACTTCCT-GTAGAAATCTTTCTGCAAGATTCTCATTGACGATTCCATCA 148 Query 16646 CTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTT 16705 || || |||||||||||||||| ||| ||| ||| | | | ||| || || Sbjct 149 CTGGCCGCAAAAAACGCAAGTACATGTGAAATGAAA---TACTGCTGATCCGA---CGTT 202 Query 16706 AACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACA 16765 || || | ||| || |||||||| ||||| || |||||||||||| ||||| Sbjct 203 AATTCGTTCCATCTATCCTTGTTTAAATCGATTTCTTCAACTGTCCAAAAAGAATCAACA 262 Query 16766 GCCTTTTTATACATTT 16781 |||| || |||||||| Sbjct 263 GCCTGTTCATACATTT 278 >seq238864 Length=103277 Score = 89.7 bits (98), Expect = 5e-13 Identities = 107/140 (76%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 16528 ATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCAT-AAAAGCATCTAGCTT 16586 ||||||||| |||| || ||||||||||||||| || |||| | ||||| ||| |||| Sbjct 87749 ATACATTTCCGAATCAACATTCTCCATTGCTATGTGGAAACTGTAAAAAGTTTCT-GCTT 87691 Query 16587 CGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGC 16646 | | |||| |||||| ||| || |||| || |||| |||||||||||||| | Sbjct 87690 CCGGCATTT-TACTTCTTTAAGAAATCTGTCTGTCAAATTTTTATTAACTATTCCATCAC 87632 Query 16647 TAGCTGC-AAAAAACGCAAG 16665 | || || |||||| ||||| Sbjct 87631 TGGCCGCGAAAAAAGGCAAG 87612 >seq217494 Length=14875 Score = 87.8 bits (96), Expect = 2e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 16201 TAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTC 16260 |||| ||| ||| || | ||||||||| | ||||| || ||||| || | || || Sbjct 7272 TAACATAGGACTTACCAAATATTTAAACATCAAGCAAGCGAAGTCACAGTGGAGGCCCTC 7213 Query 16261 GTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAAT 16320 ||| || || || | ||| || || |||||||||||| | ||| ||||| || | Sbjct 7212 GTCTCTGCTGATCAGCTCATTGCTGAAGCAAAGACCTGGCATCAATCCGCGTTTCTTCAG 7153 Query 16321 CCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAAC 16380 ||||||||| | ||| || ||| ||||| || ||||| || || ||||| ||||| Sbjct 7152 CCAAAATATTGAGGCGAAGCTGCCACTGAAGAAGATCCCTTCCACGGCAGCAAAAGCAAC 7093 Query 16381 CAATCG 16386 | ||| Sbjct 7092 TACTCG 7087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461036274524400