Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Girardia_20tigrina_20[genbank_20GCA_5F001938485.1_202017-01-06] 255,254 sequences; 1,428,149,015 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq230650 149 5e-31 >seq230650 Length=142828 Score = 149 bits (164), Expect = 5e-31 Identities = 381/574 (66%), Gaps = 16/574 (3%) Strand=Plus/Plus Query 20773 GTGCTCAAACGGCCATCTCCATCTCTATGTGGGGATGGGGGTCGTAGCCCTCGAGACTCA 20832 ||| |||||||||||||||||| || | ||||| || ||||| |||||| | | | Sbjct 94492 GTGATCAAACGGCCATCTCCATGGAGATTTTCGGATGAGGATCGTAATCCTCGATAATAA 94551 Query 20833 GATCCGCGCGCGTAAAGTCCTCCAGACGCGCCACCTTTCTCAAAATCTTCAGCCGCGGAA 20892 ||| || | |||||| || | | ||| |||| || ||| || | |||| Sbjct 94552 AGTCCTCGTACTGAAAGTCTTCAATGTCTGTCACGGATCTCCGAAACTTGAGTCTGGGAA 94611 Query 20893 ACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGT 20952 |||| | ||| ||| || ||| | || | || |||||||| ||| |||| Sbjct 94612 ACGGTCTCGGCTCTCTCTTCATCTGCGTCGACAAAGCGTCCACGTGGTTCAAGTAGACGT 94671 Query 20953 GGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCA 21012 | ||||| || | | ||| | | | || || | | ||||||||||| || | || Sbjct 94672 GCGCGTCCCCGAGCGAGTGAATCAGCGCCCCGGGTTTGTGTCCCGTGACGTGGGCAACCA 94731 Query 21013 GATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGG 21072 ||||| | || || |||||||| || ||||| |||||||| |||||||| |||| Sbjct 94732 TGCGGGTCAGTATCGCATAACTGGCGATATTGAACGGCACCCCGAGCCCCATGTCAGCGG 94791 Query 21073 ACCTCTGGTACAGCTGGCAGGACAGCTC------CCCCCGAGCCACGTAAAACTGACACA 21126 |||||||||||| || ||| |||| || | || | || | ||||| || Sbjct 94792 ACCTCTGGTACAACTTGCACGACAAATCGTCGGAGGCGCGGTCGACATGGAACTGCATCA 94851 Query 21127 AAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTC-CGCGGGGTTCCACGCGCACATA 21185 | ||| || ||||| || ||||| ||| | || ||| |||||||| || || Sbjct 94852 GACAGTGGCACGGAGGCAGCGCCATGAGCGGCACATCGCGC-GGGTTCCAGGC---CACC 94907 Query 21186 ACGATGCGCCGATCGTGGGGCCG---CCTGTTAATTAGATC-CACCACGTAACGCAGCTG 21241 || | | || ||| | | ||| || | |||| | ||||| | ||||| Sbjct 94908 ACCAGGTGCGTCTCG-GTGTCCGGATTCTCGCGGATCGATCTAATCACGTGCCCGAGCTG 94966 Query 21242 GTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCT 21301 ||| | ||||| || ||| | || | | | |||||| ||||| |||||||| Sbjct 94967 GTCGAATCCCTGGCCGGTGTAATCGGTGCGCTTGTCGCGGTACTCGGCCCCGAAATGTCT 95026 Query 21302 CCACTGGAACCCGTACACCGGCCCCAGATCGCCC 21335 |||||||||||||||||||||||| ||||||||| Sbjct 95027 CCACTGGAACCCGTACACCGGCCCGAGATCGCCC 95060 Score = 86.0 bits (94), Expect = 5e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 20994 CCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACC 21053 ||||||||||| |||| || ||||| | ||||| |||||||| |||||||| ||| Sbjct 55963 CCCGTGACGTGGGCGACCATGCGGGTCAGTATCGCGTAACTGGCGATATTAAACGGTACC 55904 Query 21054 CCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTC 21100 | ||| ||||| | |||||||||||||||| || | | | || ||| Sbjct 55903 CTGAGCCCCATATAAGCGGACCTCTGGTACAACTTGTACGTCAACTC 55857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426445228165920