Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Girardia_20tigrina_20[genbank_20GCA_5F001938485.1_202017-01-06] 255,254 sequences; 1,428,149,015 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq211385 127 2e-24 seq12314 127 2e-24 seq247670 120 3e-22 seq243336 120 3e-22 seq201504 120 3e-22 seq217494 95.1 1e-14 >seq211385 Length=3642 Score = 127 bits (140), Expect = 2e-24 Identities = 182/254 (72%), Gaps = 8/254 (3%) Strand=Plus/Minus Query 14165 ATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAA-GCATCTAGCTT 14223 ||||||||| || || || |||||||| ||||| || |||| ||||| || ||| |||| Sbjct 2044 ATACATTTCTGAATGAATATTTTCCATTGCTATTTGGAAACTGTAAAAAGCTTCT-GCTT 1986 Query 14224 CCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCAC 14283 ||| | || |||||| ||||||||| |||||||||||||||||||| ||||||| Sbjct 1985 CCGGCATTTTTACTTCTTTCAGAAATCTTTCTGCCAAATTTTCATTAACTATTCCATCAC 1926 Query 14284 TAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTT 14343 | ||||| ||||| || | | | ||| || | ||| ||||| || | | | Sbjct 1925 TGGCTGCGAAAAAGGCAAGGACATGCGAAATGAAATGTTGTTCTTCCGGTTTTAAGTCGT 1866 Query 14344 TCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAG 14403 ||| || ||| || || | || || ||| |||||||||||||| | | | || Sbjct 1865 TCC------ATCTATCTTTCGACAAATTTATTTCTTCAACTGTCCAAAAGGAATCAAGAG 1812 Query 14404 CTTTTTTATACATT 14417 | | |||||||||| Sbjct 1811 CGTGTTTATACATT 1798 >seq12314 Length=2576 Score = 127 bits (140), Expect = 2e-24 Identities = 182/254 (72%), Gaps = 8/254 (3%) Strand=Plus/Plus Query 14165 ATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAA-GCATCTAGCTT 14223 ||||||||| || || || |||||||| ||||| || |||| ||||| || ||| |||| Sbjct 1599 ATACATTTCTGAATGAATATTTTCCATTGCTATTTGGAAACTGTAAAAAGCTTCT-GCTT 1657 Query 14224 CCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCAC 14283 ||| | || |||||| ||||||||| |||||||||||||||||||| ||||||| Sbjct 1658 CCGGCATTTTTACTTCTTTCAGAAATCTTTCTGCCAAATTTTCATTAACTATTCCATCAC 1717 Query 14284 TAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTT 14343 | ||||| ||||| || | | | ||| || | ||| ||||| || | | | Sbjct 1718 TGGCTGCGAAAAAGGCAAGGACATGCGAAATGAAATGTTGTTCTTCCGGTTTTAAGTCGT 1777 Query 14344 TCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAG 14403 ||| || ||| || || | || || ||| |||||||||||||| | | | || Sbjct 1778 TCC------ATCTATCTTTCGACAAATTTATTTCTTCAACTGTCCAAAAGGAATCAAGAG 1831 Query 14404 CTTTTTTATACATT 14417 | | |||||||||| Sbjct 1832 CGTGTTTATACATT 1845 >seq247670 Length=3146 Score = 120 bits (132), Expect = 3e-22 Identities = 199/280 (71%), Gaps = 12/280 (4%) Strand=Plus/Plus Query 14141 AATGTATGTATCAAT-AAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCT 14199 |||||| |||||||| || | | ||||||||| || || | |||||||| ||||| | Sbjct 920 AATGTAAGTATCAATCAACTTTGA-ATACATTTCCGAATGAACATTTTCCATCGCTATTT 978 Query 14200 GAAAACCATAAAA-GCATCTAGCTTCCGACCATTGTACTTCCGAGTA-AAATCTTTCGGC 14257 | |||| ||||| || ||| ||||||| | || ||||||| ||| ||||||||| || Sbjct 979 GGAAACTGTAAAAAGCTTCT-GCTTCCGGCATTTTTACTTCCT-GTAGAAATCTTTCTGC 1036 Query 14258 CAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAA 14317 | ||| ||||| || || |||||||| || |||||||| || | || | | ||| || Sbjct 1037 AAGATTCTCATTGACGATTCCATCACTGGCCGCAAAAAACGCAAGTACATGTGAAATGAA 1096 Query 14318 GTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTC 14377 || |||| || | | || ||||| | |||||| | ||| | ||| Sbjct 1097 ATACTGCTGATCCGACGTTAATTCGTTCCA------TCTATCCTTGTTTAAATCGATTTC 1150 Query 14378 ATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATT 14417 ||||||||||||||| | | ||||| | || ||||||| Sbjct 1151 TTCAACTGTCCAAAAAGAATCAACAGCCTGTTCATACATT 1190 >seq243336 Length=1505 Score = 120 bits (132), Expect = 3e-22 Identities = 199/280 (71%), Gaps = 12/280 (4%) Strand=Plus/Plus Query 14141 AATGTATGTATCAAT-AAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCT 14199 |||||| |||||||| || | | ||||||||| || || | |||||||| ||||| | Sbjct 7 AATGTAAGTATCAATCAACTTTGA-ATACATTTCCGAATGAACATTTTCCATCGCTATTT 65 Query 14200 GAAAACCATAAAA-GCATCTAGCTTCCGACCATTGTACTTCCGAGTA-AAATCTTTCGGC 14257 | |||| ||||| || ||| ||||||| | || ||||||| ||| ||||||||| || Sbjct 66 GGAAACTGTAAAAAGCTTCT-GCTTCCGGCATTTTTACTTCCT-GTAGAAATCTTTCTGC 123 Query 14258 CAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAA 14317 | ||| ||||| || || |||||||| || |||||||| || | || | | ||| || Sbjct 124 AAGATTCTCATTGACGATTCCATCACTGGCCGCAAAAAACGCAAGTACATGTGAAATGAA 183 Query 14318 GTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTC 14377 || |||| || | | || ||||| | |||||| | ||| | ||| Sbjct 184 ATACTGCTGATCCGACGTTAATTCGTTCCA------TCTATCCTTGTTTAAATCGATTTC 237 Query 14378 ATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATT 14417 ||||||||||||||| | | ||||| | || ||||||| Sbjct 238 TTCAACTGTCCAAAAAGAATCAACAGCCTGTTCATACATT 277 >seq201504 Length=1836 Score = 120 bits (132), Expect = 3e-22 Identities = 199/280 (71%), Gaps = 12/280 (4%) Strand=Plus/Minus Query 14141 AATGTATGTATCAAT-AAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCT 14199 |||||| |||||||| || | | ||||||||| || || | |||||||| ||||| | Sbjct 598 AATGTAAGTATCAATCAACTTTGA-ATACATTTCCGAATGAACATTTTCCATCGCTATTT 540 Query 14200 GAAAACCATAAAA-GCATCTAGCTTCCGACCATTGTACTTCCGAGTA-AAATCTTTCGGC 14257 | |||| ||||| || ||| ||||||| | || ||||||| ||| ||||||||| || Sbjct 539 GGAAACTGTAAAAAGCTTCT-GCTTCCGGCATTTTTACTTCCT-GTAGAAATCTTTCTGC 482 Query 14258 CAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAA 14317 | ||| ||||| || || |||||||| || |||||||| || | || | | ||| || Sbjct 481 AAGATTCTCATTGACGATTCCATCACTGGCCGCAAAAAACGCAAGTACATGTGAAATGAA 422 Query 14318 GTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTC 14377 || |||| || | | || ||||| | |||||| | ||| | ||| Sbjct 421 ATACTGCTGATCCGACGTTAATTCGTTCCA------TCTATCCTTGTTTAAATCGATTTC 368 Query 14378 ATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATT 14417 ||||||||||||||| | | ||||| | || ||||||| Sbjct 367 TTCAACTGTCCAAAAAGAATCAACAGCCTGTTCATACATT 328 >seq217494 Length=14875 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/235 (70%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 13856 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13915 || |||||| || || || || || ||||| || |||||||| ||||| || || || || Sbjct 7254 ATATTTAAACATCAAGCAAGCGAAGTCACAGTGGAGGCCCTCGTCTCTGCTGATCAGCTC 7195 Query 13916 GTT--TGAAAATGTTAAT-CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC 13972 || |||| | || |||||||||||||| ||||| || | ||||||||||| || Sbjct 7194 ATTGCTGAA---GCAAAGACCTGGCATCAATCCGCGTTTCTTCAGCCAAAATATTGAGGC 7138 Query 13973 AAA--TGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCA 14030 || || | | ||| ||| || || || || |||||||| || | || ||| ||| Sbjct 7137 GAAGCTGCCACTGAA--GAAGATCCCTTCCACGGCAGCAAAAGCAACTACTCGGATTCCG 7080 Query 14031 AACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAA 14085 || | | | | | | || ||||| | ||||||||||| ||||||| || Sbjct 7079 AATGTGGACTCTCTATCGGAGATCCAACGTAGAGCCCATTCAGCCTTTTTTTGAA 7025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478197343863600