Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Girardia_20tigrina_20[genbank_20GCA_5F001938485.1_202017-01-06] 255,254 sequences; 1,428,149,015 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq211385 109 5e-19 seq12314 109 5e-19 seq247670 105 6e-18 seq243336 105 6e-18 seq201504 105 6e-18 seq217494 96.9 3e-15 >seq211385 Length=3642 Score = 109 bits (120), Expect = 5e-19 Identities = 178/254 (70%), Gaps = 8/254 (3%) Strand=Plus/Minus Query 13953 ATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAA-CATCTAGCTT 14011 ||||||||| || || || ||||| || ||||| || |||| |||||| | ||| |||| Sbjct 2044 ATACATTTCTGAATGAATATTTTCCATTGCTATTTGGAAACTGTAAAAAGCTTCT-GCTT 1986 Query 14012 CTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCAC 14071 | | | || ||| || ||||||||||||||| ||||||||||| || ||||||| Sbjct 1985 CCGGCATTTTTACTTCTTTCAGAAATCTTTCTGCCAAATTTTCATTAACTATTCCATCAC 1926 Query 14072 TAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTT 14131 | ||||| ||||| || | | | ||| || | ||| ||||| || | | | Sbjct 1925 TGGCTGCGAAAAAGGCAAGGACATGCGAAATGAAATGTTGTTCTTCCGGTTTTAAGTCGT 1866 Query 14132 TCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAG 14191 |||| | ||| || || | || || ||| |||||||||||||| | | | || Sbjct 1865 TCCA------TCTATCTTTCGACAAATTTATTTCTTCAACTGTCCAAAAGGAATCAAGAG 1812 Query 14192 CTTTTTTATACATT 14205 | | |||||||||| Sbjct 1811 CGTGTTTATACATT 1798 >seq12314 Length=2576 Score = 109 bits (120), Expect = 5e-19 Identities = 178/254 (70%), Gaps = 8/254 (3%) Strand=Plus/Plus Query 13953 ATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAA-CATCTAGCTT 14011 ||||||||| || || || ||||| || ||||| || |||| |||||| | ||| |||| Sbjct 1599 ATACATTTCTGAATGAATATTTTCCATTGCTATTTGGAAACTGTAAAAAGCTTCT-GCTT 1657 Query 14012 CTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCAC 14071 | | | || ||| || ||||||||||||||| ||||||||||| || ||||||| Sbjct 1658 CCGGCATTTTTACTTCTTTCAGAAATCTTTCTGCCAAATTTTCATTAACTATTCCATCAC 1717 Query 14072 TAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTT 14131 | ||||| ||||| || | | | ||| || | ||| ||||| || | | | Sbjct 1718 TGGCTGCGAAAAAGGCAAGGACATGCGAAATGAAATGTTGTTCTTCCGGTTTTAAGTCGT 1777 Query 14132 TCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAG 14191 |||| | ||| || || | || || ||| |||||||||||||| | | | || Sbjct 1778 TCCA------TCTATCTTTCGACAAATTTATTTCTTCAACTGTCCAAAAGGAATCAAGAG 1831 Query 14192 CTTTTTTATACATT 14205 | | |||||||||| Sbjct 1832 CGTGTTTATACATT 1845 >seq247670 Length=3146 Score = 105 bits (116), Expect = 6e-18 Identities = 196/280 (70%), Gaps = 12/280 (4%) Strand=Plus/Plus Query 13929 AATGTATGTATCAAT-AAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCT 13987 |||||| |||||||| || | | ||||||||| || || | ||||| || ||||| | Sbjct 920 AATGTAAGTATCAATCAACTTTGA-ATACATTTCCGAATGAACATTTTCCATCGCTATTT 978 Query 13988 GAAAACCATAAAAA-CATCTAGCTTCTGACCATTGTACCTCCGAGTA-AAATCTTTCTGC 14045 | |||| |||||| | ||| ||||| | | || ||| ||| ||| |||||||||||| Sbjct 979 GGAAACTGTAAAAAGCTTCT-GCTTCCGGCATTTTTACTTCCT-GTAGAAATCTTTCTGC 1036 Query 14046 CAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAA 14105 | || ||||| || || |||||||| || |||||||| || | || | | ||| || Sbjct 1037 AAGATTCTCATTGACGATTCCATCACTGGCCGCAAAAAACGCAAGTACATGTGAAATGAA 1096 Query 14106 GTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTC 14165 || |||| || | | || ||||| | |||||| | ||| | ||| Sbjct 1097 ATACTGCTGATCCGACGTTAATTCGTTCCA------TCTATCCTTGTTTAAATCGATTTC 1150 Query 14166 ATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATT 14205 ||||||||||||||| | | ||||| | || ||||||| Sbjct 1151 TTCAACTGTCCAAAAAGAATCAACAGCCTGTTCATACATT 1190 >seq243336 Length=1505 Score = 105 bits (116), Expect = 6e-18 Identities = 196/280 (70%), Gaps = 12/280 (4%) Strand=Plus/Plus Query 13929 AATGTATGTATCAAT-AAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCT 13987 |||||| |||||||| || | | ||||||||| || || | ||||| || ||||| | Sbjct 7 AATGTAAGTATCAATCAACTTTGA-ATACATTTCCGAATGAACATTTTCCATCGCTATTT 65 Query 13988 GAAAACCATAAAAA-CATCTAGCTTCTGACCATTGTACCTCCGAGTA-AAATCTTTCTGC 14045 | |||| |||||| | ||| ||||| | | || ||| ||| ||| |||||||||||| Sbjct 66 GGAAACTGTAAAAAGCTTCT-GCTTCCGGCATTTTTACTTCCT-GTAGAAATCTTTCTGC 123 Query 14046 CAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAA 14105 | || ||||| || || |||||||| || |||||||| || | || | | ||| || Sbjct 124 AAGATTCTCATTGACGATTCCATCACTGGCCGCAAAAAACGCAAGTACATGTGAAATGAA 183 Query 14106 GTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTC 14165 || |||| || | | || ||||| | |||||| | ||| | ||| Sbjct 184 ATACTGCTGATCCGACGTTAATTCGTTCCA------TCTATCCTTGTTTAAATCGATTTC 237 Query 14166 ATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATT 14205 ||||||||||||||| | | ||||| | || ||||||| Sbjct 238 TTCAACTGTCCAAAAAGAATCAACAGCCTGTTCATACATT 277 >seq201504 Length=1836 Score = 105 bits (116), Expect = 6e-18 Identities = 196/280 (70%), Gaps = 12/280 (4%) Strand=Plus/Minus Query 13929 AATGTATGTATCAAT-AAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCT 13987 |||||| |||||||| || | | ||||||||| || || | ||||| || ||||| | Sbjct 598 AATGTAAGTATCAATCAACTTTGA-ATACATTTCCGAATGAACATTTTCCATCGCTATTT 540 Query 13988 GAAAACCATAAAAA-CATCTAGCTTCTGACCATTGTACCTCCGAGTA-AAATCTTTCTGC 14045 | |||| |||||| | ||| ||||| | | || ||| ||| ||| |||||||||||| Sbjct 539 GGAAACTGTAAAAAGCTTCT-GCTTCCGGCATTTTTACTTCCT-GTAGAAATCTTTCTGC 482 Query 14046 CAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAA 14105 | || ||||| || || |||||||| || |||||||| || | || | | ||| || Sbjct 481 AAGATTCTCATTGACGATTCCATCACTGGCCGCAAAAAACGCAAGTACATGTGAAATGAA 422 Query 14106 GTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTC 14165 || |||| || | | || ||||| | |||||| | ||| | ||| Sbjct 421 ATACTGCTGATCCGACGTTAATTCGTTCCA------TCTATCCTTGTTTAAATCGATTTC 368 Query 14166 ATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATT 14205 ||||||||||||||| | | ||||| | || ||||||| Sbjct 367 TTCAACTGTCCAAAAAGAATCAACAGCCTGTTCATACATT 328 >seq217494 Length=14875 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 13644 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13703 || |||||| || || || || || ||||| || |||||||| ||||| || || || || Sbjct 7254 ATATTTAAACATCAAGCAAGCGAAGTCACAGTGGAGGCCCTCGTCTCTGCTGATCAGCTC 7195 Query 13704 GTT--TGAAAATGTTAAT-CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC 13760 || |||| | || |||||||||||||| ||||| || | ||||||||||| || Sbjct 7194 ATTGCTGAA---GCAAAGACCTGGCATCAATCCGCGTTTCTTCAGCCAAAATATTGAGGC 7138 Query 13761 GAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAA 13820 ||| || ||||| || || || || |||||||| || | || ||| ||| || Sbjct 7137 GAAGCTGCCACTGAAGAAGATCCCTTCCACGGCAGCAAAAGCAACTACTCGGATTCCGAA 7078 Query 13821 CGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAA 13873 | | | | | | || ||||| | ||||||||||| ||||||| || Sbjct 7077 TGTGGACTCTCTATCGGAGATCCAACGTAGAGCCCATTCAGCCTTTTTTTGAA 7025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477061778680560