Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Girardia_20tigrina_20[genbank_20GCA_5F001938485.1_202017-01-06] 255,254 sequences; 1,428,149,015 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq211385 141 8e-29 seq12314 132 4e-26 seq247670 113 4e-20 seq243336 113 4e-20 seq201504 113 4e-20 >seq211385 Length=3642 Score = 141 bits (156), Expect = 8e-29 Identities = 203/282 (72%), Gaps = 18/282 (6%) Strand=Plus/Minus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 |||||||| ||| ||||| | ||||||||||||||||||||||||||| |||||||| Sbjct 2068 AATATAAGAATCAATCAACAGTGAATACATTTCTGAATGAATATTTTCCATTGCTATTTG 2009 Query 13480 GAAACCATAAAAA-CATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTA 13538 ||||| |||||| | ||| || || | | | ||||| |||||||||||| | Sbjct 2008 GAAACTGTAAAAAGCTTCT-GCTTCCGGCATTTTTACTTCTTTCAGAAATCTTTCTGCCA 1950 Query 13539 AGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAtt 13598 | ||||| |||||||| || ||||| || || ||||| ||||| | ||| ||| || | Sbjct 1949 AATTTTCATTAACTATTCCATCACTGGCTGCGAAAAAGGCAAGGACATGCGAAATGAAAT 1890 Query 13599 ttttttCGTTTTCTGACAACTTTAA-----CCAATCTGGAAAATCTTTTGATAAATCTAC 13653 || ||| ||| | ||||| | |||| |||||| || |||| || Sbjct 1889 GTTGTTC---TTC---CGGTTTTAAGTCGTTCCATCT-----ATCTTTCGACAAATTTAT 1841 Query 13654 CTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACAT 13695 || ||||| |||||||| ||| ||| ||| | |||||||| Sbjct 1840 TTCTTCAACTGTCCAAAAGGAATCAAGAGCGTGTTTATACAT 1799 >seq12314 Length=2576 Score = 132 bits (146), Expect = 4e-26 Identities = 201/282 (71%), Gaps = 18/282 (6%) Strand=Plus/Plus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 ||||||| || ||||| | ||||||||||||||||||||||||||| |||||||| Sbjct 1575 AATATAACAATTAATCAACAGTGAATACATTTCTGAATGAATATTTTCCATTGCTATTTG 1634 Query 13480 GAAACCATAAAAA-CATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTA 13538 ||||| |||||| | ||| || || | | | ||||| |||||||||||| | Sbjct 1635 GAAACTGTAAAAAGCTTCT-GCTTCCGGCATTTTTACTTCTTTCAGAAATCTTTCTGCCA 1693 Query 13539 AGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAtt 13598 | ||||| |||||||| || ||||| || || ||||| ||||| | ||| ||| || | Sbjct 1694 AATTTTCATTAACTATTCCATCACTGGCTGCGAAAAAGGCAAGGACATGCGAAATGAAAT 1753 Query 13599 ttttttCGTTTTCTGACAACTTTAA-----CCAATCTGGAAAATCTTTTGATAAATCTAC 13653 || ||| ||| | ||||| | |||| |||||| || |||| || Sbjct 1754 GTTGTTC---TTC---CGGTTTTAAGTCGTTCCATCT-----ATCTTTCGACAAATTTAT 1802 Query 13654 CTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACAT 13695 || ||||| |||||||| ||| ||| ||| | |||||||| Sbjct 1803 TTCTTCAACTGTCCAAAAGGAATCAAGAGCGTGTTTATACAT 1844 >seq247670 Length=3146 Score = 113 bits (124), Expect = 4e-20 Identities = 197/280 (70%), Gaps = 14/280 (5%) Strand=Plus/Plus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 ||| |||||||| ||||| ||||||||| ||||||| |||||||||||||||||| Sbjct 920 AATGTAAGTATCAATCAACTTTGAATACATTTCCGAATGAACATTTTCCATCGCTATTTG 979 Query 13480 GAAACCATAAAAA-CATCTAGCCTCTGATACCTGAACTTCGGAGTA-AAATCTTTCTGCT 13537 ||||| |||||| | ||| || || | | | ||||| ||| |||||||||||| Sbjct 980 GAAACTGTAAAAAGCTTCT-GCTTCCGGCATTTTTACTTC-CTGTAGAAATCTTTCTGCA 1037 Query 13538 AAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAt 13597 | || || || || || || ||||| || |||||||| ||||||| || ||| || Sbjct 1038 AGATTCTCATTGACGATTCCATCACTGGCCGCAAAAAACGCAAGTACATGTGAAATGAA- 1096 Query 13598 tttttttCGTTTTCTGAC--AACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCT 13655 | | | || ||| | || | |||| ||| || |||||| | | Sbjct 1097 --ATACTGCTGATCCGACGTTAATTCGTTCCATCT-----ATCCTTGTTTAAATCGATTT 1149 Query 13656 CCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACAT 13695 | ||||| |||||||||||| ||||||||| | |||||| Sbjct 1150 CTTCAACTGTCCAAAAAGAATCAACAGCCTGTTCATACAT 1189 >seq243336 Length=1505 Score = 113 bits (124), Expect = 4e-20 Identities = 197/280 (70%), Gaps = 14/280 (5%) Strand=Plus/Plus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 ||| |||||||| ||||| ||||||||| ||||||| |||||||||||||||||| Sbjct 7 AATGTAAGTATCAATCAACTTTGAATACATTTCCGAATGAACATTTTCCATCGCTATTTG 66 Query 13480 GAAACCATAAAAA-CATCTAGCCTCTGATACCTGAACTTCGGAGTA-AAATCTTTCTGCT 13537 ||||| |||||| | ||| || || | | | ||||| ||| |||||||||||| Sbjct 67 GAAACTGTAAAAAGCTTCT-GCTTCCGGCATTTTTACTTC-CTGTAGAAATCTTTCTGCA 124 Query 13538 AAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAt 13597 | || || || || || || ||||| || |||||||| ||||||| || ||| || Sbjct 125 AGATTCTCATTGACGATTCCATCACTGGCCGCAAAAAACGCAAGTACATGTGAAATGAA- 183 Query 13598 tttttttCGTTTTCTGAC--AACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCT 13655 | | | || ||| | || | |||| ||| || |||||| | | Sbjct 184 --ATACTGCTGATCCGACGTTAATTCGTTCCATCT-----ATCCTTGTTTAAATCGATTT 236 Query 13656 CCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACAT 13695 | ||||| |||||||||||| ||||||||| | |||||| Sbjct 237 CTTCAACTGTCCAAAAAGAATCAACAGCCTGTTCATACAT 276 >seq201504 Length=1836 Score = 113 bits (124), Expect = 4e-20 Identities = 197/280 (70%), Gaps = 14/280 (5%) Strand=Plus/Minus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 ||| |||||||| ||||| ||||||||| ||||||| |||||||||||||||||| Sbjct 598 AATGTAAGTATCAATCAACTTTGAATACATTTCCGAATGAACATTTTCCATCGCTATTTG 539 Query 13480 GAAACCATAAAAA-CATCTAGCCTCTGATACCTGAACTTCGGAGTA-AAATCTTTCTGCT 13537 ||||| |||||| | ||| || || | | | ||||| ||| |||||||||||| Sbjct 538 GAAACTGTAAAAAGCTTCT-GCTTCCGGCATTTTTACTTC-CTGTAGAAATCTTTCTGCA 481 Query 13538 AAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAt 13597 | || || || || || || ||||| || |||||||| ||||||| || ||| || Sbjct 480 AGATTCTCATTGACGATTCCATCACTGGCCGCAAAAAACGCAAGTACATGTGAAATGAA- 422 Query 13598 tttttttCGTTTTCTGAC--AACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCT 13655 | | | || ||| | || | |||| ||| || |||||| | | Sbjct 421 --ATACTGCTGATCCGACGTTAATTCGTTCCATCT-----ATCCTTGTTTAAATCGATTT 369 Query 13656 CCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACAT 13695 | ||||| |||||||||||| ||||||||| | |||||| Sbjct 368 CTTCAACTGTCCAAAAAGAATCAACAGCCTGTTCATACAT 329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429641653350108