Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Girardia_20tigrina_20[genbank_20GCA_5F001938485.1_202017-01-06] 255,254 sequences; 1,428,149,015 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq228324 141 8e-29 >seq228324 Length=12828 Score = 141 bits (156), Expect = 8e-29 Identities = 209/291 (72%), Gaps = 4/291 (1%) Strand=Plus/Minus Query 5500 CACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCT- 5558 |||||| || || ||| ||||| ||||| | || || || || || | | ||| | Sbjct 7306 CACGCCAGTCGATCCGTATCCGTTGGCGCCGCGCTCGGTGTCCTCAAGCGA-GTCACATT 7248 Query 5559 CTTCCACAT-CGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTC 5617 | ||| || ||| || | | | | ||||||||||||||| || || | ||||||| | Sbjct 7247 CGACCAGATTCGGCGACAGAATC-CTCTCGCAGATCAGCTGGGCGATCCTGTCGCCCTTG 7189 Query 5618 TTTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 | ||| |||||||| | | ||||||||||| ||| ||||| |||||||| |||||| Sbjct 7188 GTCACCCTGAAATCGTCATCGGAGAAGTTGAACAACACGACGCCGACGTTGCCCCGGTAG 7129 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGG 5737 || ||| || ||||||||||| || |||||||||| ||| || || || | Sbjct 7128 TCCTGGTCGATGACGCCCGCGCCGACATCGATGAAGTTCTTCCAGGCGAGTCCACTCCTT 7069 Query 5738 GGAGCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGTG 5788 || ||||| ||||| ||||| || |||||||| ||||| | ||| ||| Sbjct 7068 GGGGCCACACGGCCATAGCAACCGTCGGGAAGGGCGATCTGGATGTCTGTG 7018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428716540272848