Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Girardia_20tigrina_20[genbank_20GCA_5F001938485.1_202017-01-06] 255,254 sequences; 1,428,149,015 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq152943 102 1e-16 seq129533 102 1e-16 seq187297 96.9 4e-15 seq3088 89.7 6e-13 >seq152943 Length=3249 Score = 102 bits (112), Expect = 1e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 19328 GTTAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTT 19387 ||||||| | | | ||| | ||||||| ||| |||| || || || ||||| ||| Sbjct 2724 GTTAAAAATCGAGTGAGAACGACTAAAATTCCTCAAATTGGGGACAAATTTGCATCTCGA 2783 Query 19388 ACTGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAA 19447 || ||| ||||| ||||||||||| ||||| ||||| |||||||| || || Sbjct 2784 CATGGTCAGAAAGGAACATGTGGTATTCAATATCGACAAGAGGATATGCCCTTCACATCC 2843 Query 19448 GATGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 || || ||| || || | ||||||||||| |||||| |||| ||||| ||||| Sbjct 2844 GAAGGAATAACTCCTGACATAATTATTAACCCCCATGCTATTCCTAGTCGTATGAC 2899 >seq129533 Length=6596 Score = 102 bits (112), Expect = 1e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 19328 GTTAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTT 19387 ||||||| | | | ||| | ||||||| ||| |||| || || || ||||| ||| Sbjct 6365 GTTAAAAATCGAGTGAGAACGACTAAAATTCCTCAAATTGGGGACAAATTTGCATCTCGA 6306 Query 19388 ACTGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAA 19447 || ||| ||||| ||||||||||| ||||| ||||| |||||||| || || Sbjct 6305 CATGGTCAGAAAGGAACATGTGGTATTCAATATCGACAAGAGGATATGCCCTTCACATCC 6246 Query 19448 GATGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 || || ||| || || | ||||||||||| |||||| |||| ||||| ||||| Sbjct 6245 GAAGGAATAACTCCTGACATAATTATTAACCCCCATGCTATTCCTAGTCGTATGAC 6190 >seq187297 Length=18085 Score = 96.9 bits (106), Expect = 4e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 19328 GTTAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTT 19387 ||||||||| | | ||| | ||||||| ||| |||| || || || ||||| ||| Sbjct 10190 GTTAAAATTCGAGTGAGAACGCCTAAAATTCCTCAAATTGGGGACAAATTTGCATCTCGA 10249 Query 19388 ACTGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAA 19447 || ||| ||||| ||||||||||| ||||| ||||| |||||||| || || Sbjct 10250 CATGGTCAGAAAGGAACATGTGGTATTCAATATCGACAAGAGGATATGCCCTTCACATCC 10309 Query 19448 GATGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 || || || || || | |||||||| || |||||| |||| ||||| ||||| Sbjct 10310 GAAGGAATCACTCCTGACATAATTATTAATCCCCATGCTATTCCTAGTCGTATGAC 10365 >seq3088 Length=3385 Score = 89.7 bits (98), Expect = 6e-13 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 19352 AAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTT-ACTGCTCAAAAAGGCACATGTGG 19410 ||| ||||| |||| |||||||| ||||| || | || || |||||||| | |||||| Sbjct 243 AAAGTACCTCAAATCGGTGATAAATTTGCGTCGCGTCACGGC-CAAAAAGGAATATGTGG 301 Query 19411 TATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTAT 19470 ||| || || || ||||||||||| || |||| || || ||| || || | || Sbjct 302 TATTCGATACCGCCAGGAAGATATGCCGTTCACTAGCGAGGGAATAACTCCCGACATGAT 361 Query 19471 TATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 || || || |||||| ||||||| || ||||| Sbjct 362 CATCAATCCTCATGCTATTCCAAGCCGCATGAC 394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593970766106400