Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Girardia_20tigrina_20[genbank_20GCA_5F001938485.1_202017-01-06] 255,254 sequences; 1,428,149,015 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq211385 118 1e-21 seq12314 118 1e-21 seq217494 104 2e-17 seq247670 95.1 1e-14 seq243336 95.1 1e-14 seq201504 95.1 1e-14 >seq211385 Length=3642 Score = 118 bits (130), Expect = 1e-21 Identities = 178/252 (71%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 21769 ATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTC 21828 ||||||||| ||||| |||||||| || ||||| || || | ||||||| | ||| || Sbjct 2044 ATACATTTCTGAATGAATATTTTCCATTGCTATTTGGAAACTGTAAAAAGCTTCTGCTTC 1985 Query 21829 TGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACT 21888 | || || || ||||| || ||||| |||||||| |||||||||||||| Sbjct 1984 CGGCATTTTTACTTCTTTCAGAAATCTTTCTGCCAAATTTTCATTAACTATTCCATCACT 1925 Query 21889 GGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTT 21948 ||| || ||||| || | | || || |||| | |||| | | |||| | || Sbjct 1924 GGCTGCGAAAAAGGCAAGGACATGCGAAATGAAATGTTGTTCTTCCGGTTTTAAGTCGTT 1865 Query 21949 CCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGC 22008 || |||| |||||| || |||| || ||||||| |||||||||| | ||| ||| Sbjct 1864 CC-ATCT-----ATCTTTCGACAAATTTATTTCTTCAACTGTCCAAAAGGAATCAAGAGC 1811 Query 22009 CTTTTTATACAT 22020 | ||||||||| Sbjct 1810 GTGTTTATACAT 1799 >seq12314 Length=2576 Score = 118 bits (130), Expect = 1e-21 Identities = 178/252 (71%), Gaps = 6/252 (2%) Strand=Plus/Plus Query 21769 ATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTC 21828 ||||||||| ||||| |||||||| || ||||| || || | ||||||| | ||| || Sbjct 1599 ATACATTTCTGAATGAATATTTTCCATTGCTATTTGGAAACTGTAAAAAGCTTCTGCTTC 1658 Query 21829 TGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACT 21888 | || || || ||||| || ||||| |||||||| |||||||||||||| Sbjct 1659 CGGCATTTTTACTTCTTTCAGAAATCTTTCTGCCAAATTTTCATTAACTATTCCATCACT 1718 Query 21889 GGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTT 21948 ||| || ||||| || | | || || |||| | |||| | | |||| | || Sbjct 1719 GGCTGCGAAAAAGGCAAGGACATGCGAAATGAAATGTTGTTCTTCCGGTTTTAAGTCGTT 1778 Query 21949 CCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGC 22008 || |||| |||||| || |||| || ||||||| |||||||||| | ||| ||| Sbjct 1779 CC-ATCT-----ATCTTTCGACAAATTTATTTCTTCAACTGTCCAAAAGGAATCAAGAGC 1832 Query 22009 CTTTTTATACAT 22020 | ||||||||| Sbjct 1833 GTGTTTATACAT 1844 >seq217494 Length=14875 Score = 104 bits (114), Expect = 2e-17 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 21463 TTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATT 21522 |||||||||||| || || || ||||| || | || || || || || || | ||||| Sbjct 7251 TTTAAACATCAAGCAAGCGAAGTCACAGTGGAGGCCCTCGTCTCTGCTGATCAGCTCATT 7192 Query 21523 AGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAA--T 21580 || | ||| ||||| ||||| | || || | |||||||||||| || || | Sbjct 7191 GCTGAAGCAAAGACCTGGCATCAATCCGCGTTTCTTCAGCCAAAATATTGAGGCGAAGCT 7132 Query 21581 GCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTA 21640 || ||||| ||| || || || ||||||||||| ||||||| ||| ||| |||| Sbjct 7131 GCCACTGAA--GAAGATCCCTTCCACGGCAGCAAAAGCAACTACTCGGATTCCGAATGTG 7074 Query 21641 GATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACA 21693 || ||| |||| | ||||| | ||||||| ||||||| || || ||| Sbjct 7073 GACTCTCTATCGGAGATCCAACGTAGAGCCCATTCAGCCTTTTTTTGAACACA 7021 >seq247670 Length=3146 Score = 95.1 bits (104), Expect = 1e-14 Identities = 173/252 (69%), Gaps = 6/252 (2%) Strand=Plus/Plus Query 21769 ATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTC 21828 ||||||||| ||||| | |||||| |||||||| || || | ||||||| | ||| || Sbjct 944 ATACATTTCCGAATGAACATTTTCCATCGCTATTTGGAAACTGTAAAAAGCTTCTGCTTC 1003 Query 21829 TGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACT 21888 | || || || ||||| || || | || ||||| || ||||||||||| Sbjct 1004 CGGCATTTTTACTTCCTGTAGAAATCTTTCTGCAAGATTCTCATTGACGATTCCATCACT 1063 Query 21889 GGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTT 21948 ||| |||||||| || | || || | || ||||| | | | ||||||| || Sbjct 1064 GGCCGCAAAAAACGCAAGTACATGTGAAATGAAATACTGCTGATCCGACGTTAATTCGTT 1123 Query 21949 CCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGC 22008 || |||| ||| || |||||| | ||||||| ||||||||| | ||| ||| Sbjct 1124 CC-ATCT-----ATCCTTGTTTAAATCGATTTCTTCAACTGTCCAAAAAGAATCAACAGC 1177 Query 22009 CTTTTTATACAT 22020 || || |||||| Sbjct 1178 CTGTTCATACAT 1189 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/224 (70%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 21473 AAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTT 21532 || || ||||||||||| |||||||| || || | ||| || || || ||| | | Sbjct 590 AAGCACGCAAAATCACAGTGCAAACCCTCGTCTCGACTGATAAACTCGTTACTAGAACAC 649 Query 21533 AAACCGGGCATT-AATCCTCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCTGAA 21589 | || |||||| |||| ||| | ||| | ||| ||||| || ||||| ||| ||| Sbjct 650 AGTCCAGGCATTAAATCTTCT-TGTTTCAGCCAGAATATAGATGCAAAACTGCCACTG-- 706 Query 21590 AAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTA 21649 ||||| || ||||| || |||||||| || || || ||| || | || ||||||||| Sbjct 707 AAGAAGATTCCCTCGACCGCAGCAAAAGCGACCAACCGTAACGCGAAGGTCGATTCTTTA 766 Query 21650 TCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACA 21693 || ||||| |||||||| ||||| | ||| | ||| Sbjct 767 TCTTCAATCCAACGAATTGCCCATTCAGCCTTCTTTTTGACACA 810 >seq243336 Length=1505 Score = 95.1 bits (104), Expect = 1e-14 Identities = 173/252 (69%), Gaps = 6/252 (2%) Strand=Plus/Plus Query 21769 ATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTC 21828 ||||||||| ||||| | |||||| |||||||| || || | ||||||| | ||| || Sbjct 31 ATACATTTCCGAATGAACATTTTCCATCGCTATTTGGAAACTGTAAAAAGCTTCTGCTTC 90 Query 21829 TGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACT 21888 | || || || ||||| || || | || ||||| || ||||||||||| Sbjct 91 CGGCATTTTTACTTCCTGTAGAAATCTTTCTGCAAGATTCTCATTGACGATTCCATCACT 150 Query 21889 GGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTT 21948 ||| |||||||| || | || || | || ||||| | | | ||||||| || Sbjct 151 GGCCGCAAAAAACGCAAGTACATGTGAAATGAAATACTGCTGATCCGACGTTAATTCGTT 210 Query 21949 CCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGC 22008 || |||| ||| || |||||| | ||||||| ||||||||| | ||| ||| Sbjct 211 CC-ATCT-----ATCCTTGTTTAAATCGATTTCTTCAACTGTCCAAAAAGAATCAACAGC 264 Query 22009 CTTTTTATACAT 22020 || || |||||| Sbjct 265 CTGTTCATACAT 276 >seq201504 Length=1836 Score = 95.1 bits (104), Expect = 1e-14 Identities = 173/252 (69%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 21769 ATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTC 21828 ||||||||| ||||| | |||||| |||||||| || || | ||||||| | ||| || Sbjct 574 ATACATTTCCGAATGAACATTTTCCATCGCTATTTGGAAACTGTAAAAAGCTTCTGCTTC 515 Query 21829 TGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACT 21888 | || || || ||||| || || | || ||||| || ||||||||||| Sbjct 514 CGGCATTTTTACTTCCTGTAGAAATCTTTCTGCAAGATTCTCATTGACGATTCCATCACT 455 Query 21889 GGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTT 21948 ||| |||||||| || | || || | || ||||| | | | ||||||| || Sbjct 454 GGCCGCAAAAAACGCAAGTACATGTGAAATGAAATACTGCTGATCCGACGTTAATTCGTT 395 Query 21949 CCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGC 22008 || |||| ||| || |||||| | ||||||| ||||||||| | ||| ||| Sbjct 394 CC-ATCT-----ATCCTTGTTTAAATCGATTTCTTCAACTGTCCAAAAAGAATCAACAGC 341 Query 22009 CTTTTTATACAT 22020 || || |||||| Sbjct 340 CTGTTCATACAT 329 Score = 95.1 bits (104), Expect = 1e-14 Identities = 158/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 21473 AAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTT 21532 || |||||||| ||||| |||||||| || || | ||| || || || ||| | | Sbjct 928 AAGCATGCAAAGTCACAGTGCAAACCCTCGTCTCGACTGATAAACTCGTTACTAGAACAC 869 Query 21533 AAACCGGGCATTAATCCTCTCTTTTTTAA-CCAAAATATTGACGCAAA--TGCTCCTGAA 21589 | || |||||||| ||| |||| ||| | ||| ||||| || ||||| ||| ||||| Sbjct 868 AGTCCAGGCATTAAACCT-TCTTGTTTCAGCCAGAATATAGATGCAAAACTGCCACTGAA 810 Query 21590 AAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTA 21649 ||| || ||||| || |||||||| || || || ||| || | || ||||||||| Sbjct 809 --GAAGATTCCCTCGACCGCAGCAAAAGCGACCAACCGTAACGCGAAGGTCGATTCTTTA 752 Query 21650 TCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACA 21693 || ||||| |||||||| ||||| | ||| | ||| Sbjct 751 TCTTCAATCCAACGAATTGCCCATTCAGCCTTCTTTTTGACACA 708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530203677414960