Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Girardia_20tigrina_20[genbank_20GCA_5F001938485.1_202017-01-06] 255,254 sequences; 1,428,149,015 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq211385 116 4e-21 seq12314 113 5e-20 seq247670 111 2e-19 seq243336 111 2e-19 seq201504 111 2e-19 seq217494 104 3e-17 seq238864 98.7 1e-15 >seq211385 Length=3642 Score = 116 bits (128), Expect = 4e-21 Identities = 180/255 (71%), Gaps = 8/255 (3%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || || | ||| || ||||| ||||||||||| ||||| | ||| |||||||| |||||| Sbjct 2067 ATATAAGAATCAATCAACAGTGAATACATTTCTGAATGAATATTTTCCATTGCTATTTGG 2008 Query 93422 AATCCGTAGAAA-CATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAG 93480 || | ||| ||| | ||| ||||||| || | ||||||| |||||| ||| | | Sbjct 2007 AAACTGTAAAAAGCTTCT-GCTTCCGGCATTTTTACTTCTTTCAGAAATCTTTCTGCCAA 1949 Query 93481 ATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATG 93540 ||||||||| ||||| ||||| ||||| ||||| || | | |||| || ||||| Sbjct 1948 ATTTTCATTAACTATTCCATCACTGGCTGCGAAAAAGGCAAGGACATGCGAAATGAAATG 1889 Query 93541 TTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTC 93600 || || || ||| | | | || || |||||| || | || | |||||| Sbjct 1888 TTGTTCTTCCGGTTTTAAGTCGTTCC------ATCTATCTTTCGACAAATTTATTTCTTC 1835 Query 93601 GACAGTCCAAAACGA 93615 || |||||||| || Sbjct 1834 AACTGTCCAAAAGGA 1820 >seq12314 Length=2576 Score = 113 bits (124), Expect = 5e-20 Identities = 172/243 (71%), Gaps = 8/243 (3%) Strand=Plus/Plus Query 93374 ATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAA 93433 || ||||| ||||||||||| ||||| | ||| |||||||| |||||||| | ||| ||| Sbjct 1588 ATCAACAGTGAATACATTTCTGAATGAATATTTTCCATTGCTATTTGGAAACTGTAAAAA 1647 Query 93434 -CATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGAC 93492 | ||| ||||||| || | ||||||| |||||| ||| | | ||||||||| || Sbjct 1648 GCTTCT-GCTTCCGGCATTTTTACTTCTTTCAGAAATCTTTCTGCCAAATTTTCATTAAC 1706 Query 93493 TATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATC 93552 ||| ||||| ||||| ||||| || | | |||| || ||||||| || || Sbjct 1707 TATTCCATCACTGGCTGCGAAAAAGGCAAGGACATGCGAAATGAAATGTTGTTCTTCCGG 1766 Query 93553 TTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAA 93612 ||| | | | || || |||||| || | || | |||||| || |||||||| Sbjct 1767 TTTTAAGTCGTTCC------ATCTATCTTTCGACAAATTTATTTCTTCAACTGTCCAAAA 1820 Query 93613 CGA 93615 || Sbjct 1821 GGA 1823 Score = 84.2 bits (92), Expect = 2e-11 Identities = 164/240 (68%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || |||||||| || | || |||||||| ||||||||||| ||||| || Sbjct 1255 CAAGCAAAGTCACAGTGCATCCCCTCGTCTCGACTGATCAACTCATTACTGAAGCACAAT 1314 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | | || || ||||| | ||| || || || |||||||||||| |||||| Sbjct 1315 CCAGGCATTACACCGCGCTTCTTCAACCAGAAGATAGATGCAAAACTACCACTAAAAAAG 1374 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTA-CTGCT 93270 || ||||| || || ||||| || | | ||| |||||| ||| | | | || | Sbjct 1375 ATCCCTTCGACAGCCGCAAACGCTATCACTCGTAAGGCAAACGTTGAGTCTTGATCTTC- 1433 Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTT 93330 ||||||| | ||||| || || || || | | ||| ||||| |||| || ||||| Sbjct 1434 GATCCATCGAAGCGCCCATTCAGCCTTCTTAGTGACACACGGTAGAGTTTGTATTGCGTT 1493 >seq247670 Length=3146 Score = 111 bits (122), Expect = 2e-19 Identities = 127/168 (76%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| ||||| || ||| ||||||||||| ||||| ||||| ||||| || |||||| Sbjct 921 ATGTAAGTATCAATCAACTTTGAATACATTTCCGAATGAACATTTTCCATCGCTATTTGG 980 Query 93422 AATCCGTAGAAA-CATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAG 93480 || | ||| ||| | ||| ||||||| || | ||||| || |||||| ||| | || Sbjct 981 AAACTGTAAAAAGCTTCT-GCTTCCGGCATTTTTACTTCCTGTAGAAATCTTTCTGCAAG 1039 Query 93481 ATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATG 93528 ||| |||||||| || ||||| || |||||||| || | || ||| Sbjct 1040 ATTCTCATTGACGATTCCATCACTGGCCGCAAAAAACGCAAGTACATG 1087 >seq243336 Length=1505 Score = 111 bits (122), Expect = 2e-19 Identities = 127/168 (76%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| ||||| || ||| ||||||||||| ||||| ||||| ||||| || |||||| Sbjct 8 ATGTAAGTATCAATCAACTTTGAATACATTTCCGAATGAACATTTTCCATCGCTATTTGG 67 Query 93422 AATCCGTAGAAA-CATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAG 93480 || | ||| ||| | ||| ||||||| || | ||||| || |||||| ||| | || Sbjct 68 AAACTGTAAAAAGCTTCT-GCTTCCGGCATTTTTACTTCCTGTAGAAATCTTTCTGCAAG 126 Query 93481 ATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATG 93528 ||| |||||||| || ||||| || |||||||| || | || ||| Sbjct 127 ATTCTCATTGACGATTCCATCACTGGCCGCAAAAAACGCAAGTACATG 174 >seq201504 Length=1836 Score = 111 bits (122), Expect = 2e-19 Identities = 127/168 (76%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| ||||| || ||| ||||||||||| ||||| ||||| ||||| || |||||| Sbjct 597 ATGTAAGTATCAATCAACTTTGAATACATTTCCGAATGAACATTTTCCATCGCTATTTGG 538 Query 93422 AATCCGTAGAAA-CATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAG 93480 || | ||| ||| | ||| ||||||| || | ||||| || |||||| ||| | || Sbjct 537 AAACTGTAAAAAGCTTCT-GCTTCCGGCATTTTTACTTCCTGTAGAAATCTTTCTGCAAG 479 Query 93481 ATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATG 93528 ||| |||||||| || ||||| || |||||||| || | || ||| Sbjct 478 ATTCTCATTGACGATTCCATCACTGGCCGCAAAAAACGCAAGTACATG 431 >seq217494 Length=14875 Score = 104 bits (114), Expect = 3e-17 Identities = 126/169 (75%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 93070 TACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGAT-A 93128 ||| | ||| || |||| ||||| || ||||| || | || ||||||| || | | Sbjct 7260 TACCAAATATTTAAACATCAAGCAAGCGAAGTCACAGTGGAGGCCCTCGTCTC-TGCTGA 7202 Query 93129 TCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTG 93188 ||| |||||||||||| | |||||| | || ||| |||||||| ||||||||||||| Sbjct 7201 TCAGCTCATTGCTGAAGCAAAGACCTGGCATCAATCCGCGTTTCTTCAGCCAAAATATTG 7142 Query 93189 AAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCAC 93237 | || || || ||| || || || ||||||||||| ||||| || || Sbjct 7141 AGGCGAAGCTGCCACTGAAGAAGATCCCTTCCACGGCAGCAAAAGCAAC 7093 >seq238864 Length=103277 Score = 98.7 bits (108), Expect = 1e-15 Identities = 119/161 (74%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| | ||| || ||||| |||||||||| |||| |||||||||||||| || ||| Sbjct 87772 ATGTAAGAATCAATCAACAGTAAATACATTTCCGAATCAACATTCTCCATTGCTATGTGG 87713 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || | ||| ||| | ||||||| || | ||||||| | |||||| ||| | | Sbjct 87712 AAACTGTAAAAAGTTTCTGCTTCCGGCAT-TTTACTTCTTTAAGAAATCTGTCTGTCAAA 87654 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAA 93522 |||| ||| ||||| ||||| || || ||||||| ||| Sbjct 87653 TTTTTATTAACTATTCCATCACTGGCCGCGAAAAAAGGCAA 87613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555084038166960