Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Girardia_20tigrina_20[genbank_20GCA_5F001938485.1_202017-01-06] 255,254 sequences; 1,428,149,015 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq250140 98.7 8e-16 seq142428 98.7 8e-16 seq206084 91.5 1e-13 seq219160 82.4 6e-11 >seq250140 Length=88078 Score = 98.7 bits (108), Expect = 8e-16 Identities = 165/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 || |||||| | || ||||| |||||||| || || |||||||| |||||||| || Sbjct 77587 GATACCTCCACGGAGTCGCAGAACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAGTC 77528 Query 33957 TGCCA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCA 34015 | | | || || | || |||| ||||||||| || || ||||| ||||| || || Sbjct 77527 CGAGAGAGTG-CGACCATCTTCCAGTTGCTTGCCCGCGAAGATCAGACGCTGTTGGTCTG 77469 Query 34016 CCGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATT 34075 ||| | || |||||||| ||||| ||| | | | |||||| |||| Sbjct 77468 GCGGAATGCCTTCTTTGTCTTGGATTTTCGCCTTGACATTTTCGATAGTATCAGATGATT 77409 Query 34076 CGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 | |||| || || ||||| || |||| |||||| |||||||||||||| ||| Sbjct 77408 CAACCTCGAGGGTAATCGTTTTACCCGTTAATGTTTTAACAAAGATTTGCATCTTT 77353 >seq142428 Length=13224 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/229 (70%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| | || |||| ||| || ||||| |||||||| |||||||| || | Sbjct 9368 CCTCCTCTCAGTCTCAAAACCAAATGGAGAGTGCTTTCCTTCTGGATGTTGTAGTCCGAG 9427 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | | ||| |||| ||||| || ||||| || || |||| ||||| ||||| ||| Sbjct 9428 AGTGTTCGGCCGTCCTCCAACTGTTTGCCAGCGAAGATCAAACGCTGTTGATCAGGCGGT 9487 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACT---CACACTATCAGTAGATTCG 34077 | || || |||||| | |||| |||| || | | | | || | || || Sbjct 9488 ATGCCTTCCTTGTCC-TGGATTTTGGCTT--TGACATTTTCGATGGTGTCCGCCGACTCA 9544 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCA 34126 |||| |||||||||||| || ||||| ||||| || || ||||||| Sbjct 9545 ACGTCGAGCGTTATTGTTTTACCCGTTAGGGTTTTAACGAATATTTGCA 9593 >seq206084 Length=22083 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || ||||||| ||| | || ||| ||||| |||||||| || | Sbjct 6418 CCCCCGCGCAGTCGAAGCACCAAATGCAAGGTCGACTCTTTCTGGATGTTGTAGTCGGA- 6360 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || |||| || | |||||||| || ||||||| ||||||||||| ||| Sbjct 6359 AAGAGTACGACCGTCTTCAAGCTGCTTGCCCGCGAATATCAATCGCTGCTGATCAGGCGG 6300 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGC 34078 | | ||| |||||| ||||| ||| | | ||| | | || | || ||| Sbjct 6299 AATTCCCTCCTTGTCCTGGATTTTCGCCTTGA-CGTTCTCGATCGTGTCGGACGACTCGA 6241 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 |||| || || |||||||| || |||||||| ||||| |||||||||||| Sbjct 6240 CCTCGAGAGTGATCGTTTTTCCAGTGAGTGTTTTGACAAAAATTTGCATTTTT 6188 >seq219160 Length=11457 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/198 (71%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 33936 CTCCTTCTGAATGTTGTAATCTGCCAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAA 33994 ||| ||||| |||||||| || | || || || |||| || | |||||||| || | Sbjct 11453 CTCTTTCTGGATGTTGTAGTCGGA-AAGAGTACGACCGTCTTCAAGCTGCTTGCCCGCGA 11395 Query 33995 ATATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGG 34054 |||||| |||||||| || ||| | | ||| |||||| ||||| ||| | | Sbjct 11394 ATATCAATCGCTGCTGGTCAGGCGGAATTCCCTCCTTGTCCTGGATTTTCGCCTTGACGT 11335 Query 34055 AACTCACAC-TATCAGTAGATTCGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTC 34113 ||| | |||| | || ||| |||| || || |||||||| || |||||||| Sbjct 11334 T-CTCGATCGTATCGGACGACTCGACCTCGAGAGTGATCGTTTTTCCAGTGAGTGTTTTG 11276 Query 34114 ACAAAGATTTGCATTTTT 34131 ||||| |||||||||||| Sbjct 11275 ACAAAAATTTGCATTTTT 11258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395827175353708