Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Girardia_20tigrina_20[genbank_20GCA_5F001938485.1_202017-01-06] 255,254 sequences; 1,428,149,015 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq211385 185 1e-41 seq12314 181 1e-40 seq247670 149 7e-31 seq243336 149 7e-31 seq201504 149 7e-31 seq217494 105 7e-18 seq238864 89.7 6e-13 >seq211385 Length=3642 Score = 185 bits (204), Expect = 1e-41 Identities = 244/337 (72%), Gaps = 6/337 (2%) Strand=Plus/Minus Query 19223 TATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAG 19282 |||| | || ||| | ||| ||||| | ||||||||||||||||||||||| || | Sbjct 2075 TATCCTCAATATAAGAATCAATCAACAGTGAATACATTTCTGAATGAATATTTTCCATTG 2016 Query 19283 CCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTT 19342 | || || || | ||||||| | |||||| | || | |||||| | |||||||| Sbjct 2015 CTATTTGGAAACTGTAAAAAGCTTCTGCTTCCGGCATTTTTACTTCTTTCAGAAATCTTT 1956 Query 19343 CGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAA 19402 | |||||||||||||||||||||||||||| ||||| ||||| || | ||||| || Sbjct 1955 CTGCCAAATTTTCATTAACTATTCCATCACTGGCTGCGAAAAAGGCAAGGACATGCGAAA 1896 Query 19403 TAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTA 19462 | ||||||| ||| || | | || | || | | ||| ||||||| || |||| || Sbjct 1895 TGAAATGTTGTTCTTCCG-GTTTTAAGTCGTTCCATC-----TATCTTTCGACAAATTTA 1842 Query 19463 CTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGAT 19522 |||||||||||||||||| ||| | || | ||||||||| | | ||||| | | Sbjct 1841 TTTCTTCAACTGTCCAAAAGGAATCAAGAGCGTGTTTATACATTTGAAAGATATCCGGGT 1782 Query 19523 ATTGTATAGGAAATATAACAAATCTATTTTTATTTTC 19559 | | ||| | |||| | ||| |||| | || | ||| Sbjct 1781 ACTTTATCGACAATAGACCAACTCTACTATTGTCTTC 1745 >seq12314 Length=2576 Score = 181 bits (200), Expect = 1e-40 Identities = 224/305 (73%), Gaps = 6/305 (2%) Strand=Plus/Plus Query 19255 TACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCT 19314 ||||||||||||||||||||||| || || || || || | ||||||| | |||||| Sbjct 1600 TACATTTCTGAATGAATATTTTCCATTGCTATTTGGAAACTGTAAAAAGCTTCTGCTTCC 1659 Query 19315 GTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTA 19374 | || | |||||| | ||||||||| |||||||||||||||||||||||||||| Sbjct 1660 GGCATTTTTACTTCTTTCAGAAATCTTTCTGCCAAATTTTCATTAACTATTCCATCACTG 1719 Query 19375 GCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTC 19434 ||||| ||||| || | ||||| ||| ||||||| ||| || | | || | || | Sbjct 1720 GCTGCGAAAAAGGCAAGGACATGCGAAATGAAATGTTGTTCTTCCG-GTTTTAAGTCGTT 1778 Query 19435 CAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCT 19494 | ||| ||||||| || |||| || |||||||||||||||||| ||| | || Sbjct 1779 CCATC-----TATCTTTCGACAAATTTATTTCTTCAACTGTCCAAAAGGAATCAAGAGCG 1833 Query 19495 TTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTA 19554 | ||||||||| | | ||||| | || | ||| | |||| | ||| |||| | || Sbjct 1834 TGTTTATACATTTGAAAGATATCCGGGTACTTTATCGACAATAGACCAACTCTACTATTG 1893 Query 19555 TTTTC 19559 | ||| Sbjct 1894 TCTTC 1898 Score = 98.7 bits (108), Expect = 1e-15 Identities = 165/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 18943 AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAAT 19002 |||| |||||| | || ||| ||||| ||||| || | |||||||||| ||| ||||| Sbjct 1237 AGATATTTAAATAACAGACAAGCAAAGTCACAGTGCATCCCCTCGTCTCGACTGATCAAC 1296 Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062 |||||| || || |||||||| | || | || || |||||||| ||||| ||| Sbjct 1297 TCATTACTGAAGCACAATCCAGGCATTACACCGCGCTTCTTCAACCAGAAGATAGATGCA 1356 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122 || ||| ||| || || ||||| || || ||||| || | | || | || | Sbjct 1357 AAACTACCACTAAAAAAGATCCCTTCGACAGCCGCAAACGCTATCACTCGTAAGGCAAAC 1416 Query 19123 CTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGG 19181 | | || | || | |||||| || ||||| ||||||||||| | ||||| || Sbjct 1417 GTTGAGTCTTGATCTTCGATCCATCGAAGCGCCCATTCAGCCTTCTTAGTGACACACGG 1475 >seq247670 Length=3146 Score = 149 bits (164), Expect = 7e-31 Identities = 197/269 (73%), Gaps = 12/269 (4%) Strand=Plus/Plus Query 19242 TATCAATAAACTGT----ACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGT 19297 ||||||| |||| | ||||||| ||||||| |||||| || || || || || | || Sbjct 928 TATCAATCAACTTTGAATACATTTCCGAATGAACATTTTCCATCGCTATTTGGAAACTGT 987 Query 19298 AAAAACATCTTGCTTCTGTTATCTGTACTTCACTACA-AAATCTTTCGACCAAATTTTCA 19356 ||||| | |||||| | || | |||||| || | ||||||||| | | ||| ||| Sbjct 988 AAAAAGCTTCTGCTTCCGGCATTTTTACTTC-CTGTAGAAATCTTTCTGCAAGATTCTCA 1046 Query 19357 TTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCA 19416 || || ||||||||||| || |||||||| || | ||||||| ||| |||| | | | Sbjct 1047 TTGACGATTCCATCACTGGCCGCAAAAAACGCAAGTACATGTGAAATGAAATACTGCTGA 1106 Query 19417 TCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTC 19476 || || |||||| |||| ||| |||| || |||||| | ||||||||||||| Sbjct 1107 TCCGACGTTAATTCGTTCC-ATC-----TATCCTTGTTTAAATCGATTTCTTCAACTGTC 1160 Query 19477 CAAAAAGAAGCCTCTGCTTTTTTATACAT 19505 ||||||||| | | || | || |||||| Sbjct 1161 CAAAAAGAATCAACAGCCTGTTCATACAT 1189 Score = 89.7 bits (98), Expect = 6e-13 Identities = 163/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 18943 AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAAT 19002 |||| ||| || | || || ||||||||||| || | |||||||||| ||| || || Sbjct 575 AGATATTTGAATAATAAGCACGCAAAATCACAGTGCAAACCCTCGTCTCGACTGATAAAC 634 Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062 || ||| | | | |||||||| | || || ||| | |||||||||||| ||| Sbjct 635 TCGTTACTAGAACACAGTCCAGGCATTAAATCTTCTTGTTTCAGCCAGAATATAGATGCA 694 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122 || ||| ||||| || || || || || |||||||| || | | | | | Sbjct 695 AAACTGCCACTGAAGAAGATTCCCTCGACCGCAGCAAAAGCGACCAACCGTAACGCGAAG 754 Query 19123 CTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGG 19181 | | || |||| | |||||| | |||||| |||||||||||||| ||||| || Sbjct 755 GTCGATTCTTTATCTTCAATCCAACGAATTGCCCATTCAGCCTTCTTTTTGACACACGG 813 >seq243336 Length=1505 Score = 149 bits (164), Expect = 7e-31 Identities = 197/269 (73%), Gaps = 12/269 (4%) Strand=Plus/Plus Query 19242 TATCAATAAACTGT----ACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGT 19297 ||||||| |||| | ||||||| ||||||| |||||| || || || || || | || Sbjct 15 TATCAATCAACTTTGAATACATTTCCGAATGAACATTTTCCATCGCTATTTGGAAACTGT 74 Query 19298 AAAAACATCTTGCTTCTGTTATCTGTACTTCACTACA-AAATCTTTCGACCAAATTTTCA 19356 ||||| | |||||| | || | |||||| || | ||||||||| | | ||| ||| Sbjct 75 AAAAAGCTTCTGCTTCCGGCATTTTTACTTC-CTGTAGAAATCTTTCTGCAAGATTCTCA 133 Query 19357 TTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCA 19416 || || ||||||||||| || |||||||| || | ||||||| ||| |||| | | | Sbjct 134 TTGACGATTCCATCACTGGCCGCAAAAAACGCAAGTACATGTGAAATGAAATACTGCTGA 193 Query 19417 TCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTC 19476 || || |||||| |||| ||| |||| || |||||| | ||||||||||||| Sbjct 194 TCCGACGTTAATTCGTTCC-ATC-----TATCCTTGTTTAAATCGATTTCTTCAACTGTC 247 Query 19477 CAAAAAGAAGCCTCTGCTTTTTTATACAT 19505 ||||||||| | | || | || |||||| Sbjct 248 CAAAAAGAATCAACAGCCTGTTCATACAT 276 >seq201504 Length=1836 Score = 149 bits (164), Expect = 7e-31 Identities = 197/269 (73%), Gaps = 12/269 (4%) Strand=Plus/Minus Query 19242 TATCAATAAACTGT----ACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGT 19297 ||||||| |||| | ||||||| ||||||| |||||| || || || || || | || Sbjct 590 TATCAATCAACTTTGAATACATTTCCGAATGAACATTTTCCATCGCTATTTGGAAACTGT 531 Query 19298 AAAAACATCTTGCTTCTGTTATCTGTACTTCACTACA-AAATCTTTCGACCAAATTTTCA 19356 ||||| | |||||| | || | |||||| || | ||||||||| | | ||| ||| Sbjct 530 AAAAAGCTTCTGCTTCCGGCATTTTTACTTC-CTGTAGAAATCTTTCTGCAAGATTCTCA 472 Query 19357 TTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCA 19416 || || ||||||||||| || |||||||| || | ||||||| ||| |||| | | | Sbjct 471 TTGACGATTCCATCACTGGCCGCAAAAAACGCAAGTACATGTGAAATGAAATACTGCTGA 412 Query 19417 TCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTC 19476 || || |||||| |||| ||| |||| || |||||| | ||||||||||||| Sbjct 411 TCCGACGTTAATTCGTTCC-ATC-----TATCCTTGTTTAAATCGATTTCTTCAACTGTC 358 Query 19477 CAAAAAGAAGCCTCTGCTTTTTTATACAT 19505 ||||||||| | | || | || |||||| Sbjct 357 CAAAAAGAATCAACAGCCTGTTCATACAT 329 Score = 93.3 bits (102), Expect = 5e-14 Identities = 164/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 18943 AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAAT 19002 |||| ||| || | || |||||||| ||||| || | |||||||||| ||| || || Sbjct 943 AGATATTTGAATAATAAGCATGCAAAGTCACAGTGCAAACCCTCGTCTCGACTGATAAAC 884 Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062 || ||| | | | |||||||| | ||| || ||| | |||||||||||| ||| Sbjct 883 TCGTTACTAGAACACAGTCCAGGCATTAAACCTTCTTGTTTCAGCCAGAATATAGATGCA 824 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122 || ||| ||||| || || || || || |||||||| || | | | | | Sbjct 823 AAACTGCCACTGAAGAAGATTCCCTCGACCGCAGCAAAAGCGACCAACCGTAACGCGAAG 764 Query 19123 CTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGG 19181 | | || |||| | |||||| | |||||| |||||||||||||| ||||| || Sbjct 763 GTCGATTCTTTATCTTCAATCCAACGAATTGCCCATTCAGCCTTCTTTTTGACACACGG 705 >seq217494 Length=14875 Score = 105 bits (116), Expect = 7e-18 Identities = 169/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 18945 ATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTC 19004 || |||||||||||| || || || ||||| || || ||||||||||| || |||| || Sbjct 7254 ATATTTAAACATCAAGCAAGCGAAGTCACAGTGGAGGCCCTCGTCTCTGCTGATCAGCTC 7195 Query 19005 ATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAA 19064 ||| || | ||| ||||||| ||| | ||| || | ||| ||||| || || || Sbjct 7194 ATTGCTGAAGCAAAGACCTGGCATCAATCCGCGTTTCTTCAGCCAAAATATTGAGGCGAA 7135 Query 19065 TGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACT 19124 ||| ||||| || ||||| || || ||||||||||||| || ||| | | Sbjct 7134 GCTGCCACTGAAGAAGATCCCTTCCACGGCAGCAAAAGCAACTACTCGGATTCCGAATGT 7075 Query 19125 AGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCAT 19184 | || ||| ||||| || ||||| |||||||| |||| ||||| ||||| Sbjct 7074 GGACTCTCTATCGGAGATCCAACGTAGAGCCCATTCAGCCTTTTTTTGAACACACGGCAT 7015 Query 19185 TGT 19187 || Sbjct 7014 CGT 7012 >seq238864 Length=103277 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/147 (74%), Gaps = 5/147 (3%) Strand=Plus/Minus Query 19243 ATCAATAAACTGTA----CATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTA 19298 |||||| ||| ||| |||||| |||| || ||| || || || || || || | ||| Sbjct 87764 ATCAATCAACAGTAAATACATTTCCGAATCAACATTCTCCATTGCTATGTGGAAACTGTA 87705 Query 19299 AAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATT 19358 |||| | |||||| | || | |||||| || |||||| || |||||||| ||| Sbjct 87704 AAAAGTTTCTGCTTCCGGCATTT-TACTTCTTTAAGAAATCTGTCTGTCAAATTTTTATT 87646 Query 19359 AACTATTCCATCACTAGCTGCAAAAAA 19385 ||||||||||||||| || || ||||| Sbjct 87645 AACTATTCCATCACTGGCCGCGAAAAA 87619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560315293504560