Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Girardia_20tigrina_20[genbank_20GCA_5F001938485.1_202017-01-06] 255,254 sequences; 1,428,149,015 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq230650 172 4e-38 >seq230650 Length=142828 Score = 172 bits (190), Expect = 4e-38 Identities = 413/618 (67%), Gaps = 10/618 (2%) Strand=Plus/Plus Query 29683 GGATGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGTTCTCC 29742 |||||||| |||||| |||| | || ||||| || |||||| || | || | Sbjct 94524 GGATGAGGATCGTAATCCTCGATAATAAAGTCCTCGTACTGAAAGTCTTCAATGTCTGTC 94583 Query 29743 ACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTC 29802 || || | | | ||| ||||||| ||||| ||||| |||| | ||| ||| | Sbjct 94584 ACGGATCTCCGAAACTTGAGTCTGGGAAACGGTCTCGGCTCTCTCTTCATCTGCGTCGAC 94643 Query 29803 AGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCC 29862 | | |||||||| | || ||||||||| ||||| || || | ||| | | | | || Sbjct 94644 AAAGCGTCCACGTGGTTCAAGTAGACGTGCGCGTCCCCGAGCGAGTGAATCAGCGCCCCG 94703 Query 29863 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29922 |||| | || |||||||| || | |||| || || | | || |||||||| || Sbjct 94704 GGTTTGTGTCCCGTGACGTGGGCAACCATGCGGGTCAGTATCGCATAACTGGCGATATTG 94763 Query 29923 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC-TCC 29981 || || ||||||||||||||||| | ||||||||||| | || ||||| | || || Sbjct 94764 AACGGCACCCCGAGCCCCATGTCAGCGGACCTCTGGTACAACTTGCACGACAAATCGTCG 94823 Query 29982 GTCGCTC-----ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCC 30036 | || | || | ||||| || |||||||||||| || |||||||| | Sbjct 94824 GAGGCGCGGTCGACATGGAACTGCATCAGACAGTGGCACGGAGGCAGCGCCATGAGCGGC 94883 Query 30037 AAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCT-GTCTTCTGGGTTGTTCCTGAT 30095 | || ||||||||||| ||| | | |||| || | || || || | | ||| Sbjct 94884 ACATCGCGCGGGTTCCAGGCCACCACCA-GGTGCGTCTCGGTGTCCGGATTCTCGCGGAT 94942 Query 30096 -GAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGT 30154 || | | ||| ||||| || | ||| || | ||| || | | | ||| Sbjct 94943 CGATCT-AATCACGTGCCCGAGCTGGTCGAATCCCTGGCCGGTGTAATCGGTGCGCTTGT 95001 Query 30155 CCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCT 30214 | |||||| || |||||||| ||||||||||||||||||||||| || || || ||| Sbjct 95002 CGCGGTACTCGGCCCCGAAATGTCTCCACTGGAACCCGTACACCGGCCCGAGATCGCCCG 95061 Query 30215 CTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGA 30274 ||||| ||| ||| || | | |||| || ||| || ||||| |||||||| | Sbjct 95062 GTTCCCGATGCCCGAGCCCGCGACTCTCCAGGAACTCTTTGCTGCCGTTCGCGTCCCAAA 95121 Query 30275 TCTTTACCCCCTTCTCGG 30292 | | || |||||||| Sbjct 95122 TGTGCACGTTCTTCTCGG 95139 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/202 (72%), Gaps = 7/202 (3%) Strand=Plus/Minus Query 29761 AGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTC--TTCAGCGGTTCCACGTGAT 29818 ||| | ||||| ||||| ||||| |||| | ||| ||| | |||| |||||||| | Sbjct 56071 AGTCTTGGAAACGGTCTCGGCTCTCTCTTCATCTGCGTCGATAAAGCG--TCCACGTGGT 56014 Query 29819 CCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGA 29878 || |||||||| |||||||| || ||| | | | | | |||| | || |||| Sbjct 56013 TTAG-TAGACGTGCGCGTCTCCGAGAGTGA--ATCAGCGCCACGGGTTTGTGTCCCGTGA 55957 Query 29879 CGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCC 29938 |||| || | |||| || || | | ||| |||||||| ||||| ||||||| ||||| Sbjct 55956 CGTGGGCGACCATGCGGGTCAGTATCGCGTAACTGGCGATATTAAACGGTACCCTGAGCC 55897 Query 29939 CCATGTCCCCCGACCTCTGGTA 29960 |||| | | ||||||||||| Sbjct 55896 CCATATAAGCGGACCTCTGGTA 55875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407346428188142