Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Girardia_20tigrina_20[genbank_20GCA_5F001938485.1_202017-01-06] 255,254 sequences; 1,428,149,015 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq247245 98.7 2e-15 seq153922 96.9 6e-15 seq207016 91.5 3e-13 seq166687 89.7 1e-12 seq246644 87.8 3e-12 >seq247245 Length=18620 Score = 98.7 bits (108), Expect = 2e-15 Identities = 130/178 (73%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 |||||| ||||| ||||| | |||||| | | |||| | |||||| || ||||| Sbjct 17011 GGCCAGATTACAAACGGCGATCTCGTCAGGTGCGCTGTACTCGACGATCTCCGTGCAGAG 17070 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTT-GCGATTGGCAGCGTCCT 221831 || |||||||||||||| |||||||| | |||||| || || ||| ||| | ||||| Sbjct 17071 ATTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGATTTCGCG-TTGCACGAGTCCT 17129 Query 221832 TGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG 221889 |||||||||| | || | || || || | ||| | |||||||| | |||||| Sbjct 17130 TGTAGAGCATGTATGGCACTCCCGTTTCGATCTGCGAGTCCAGAATCGATTGCCAGAG 17187 >seq153922 Length=2492 Score = 96.9 bits (106), Expect = 6e-15 Identities = 123/167 (74%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 |||||| ||||| ||||| | |||||| | | |||| | |||||| || || || Sbjct 882 GGCCAGATTACAAACGGCGATCTCGTCAGGTGCGCTGTACTCGACGATCTCCGTGCACAG 941 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTT-GCGATTGGCAGCGTCCT 221831 ||||||||||||||||| |||||||| | |||||| || || ||| ||| | ||||| Sbjct 942 ATTGCTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGATTTCGCG-TTGCACGAGTCCT 1000 Query 221832 TGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATC 221878 |||||||||| | || | || ||||| | ||| | | |||||| Sbjct 1001 TGTAGAGCATGTACGGCACTCCCGTCTCGATCTGCGAGTCGAGAATC 1047 >seq207016 Length=9131 Score = 91.5 bits (100), Expect = 3e-13 Identities = 334/504 (66%), Gaps = 35/504 (7%) Strand=Plus/Minus Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGG--TATACTGTATGATCTCTGTACAGA 221771 |||| ||||| ||||| | |||||| | || | |||| || ||||| || |||| Sbjct 6144 GCCAAATTACAAACGGCGATCTCGTCA--GGTGCACTGTACTCGATAATCTCCGTGCAGA 6087 Query 221772 GGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTT-GCGATTGGCAGCGTCC 221830 | || |||||||||||||| |||||||| | |||||| || || ||| || || |||| Sbjct 6086 GATTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGATTTCGCG-TTACAAGAGTCC 6028 Query 221831 TTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGT 221890 ||||||||||| | || | || || || | ||| | | |||||| | ||||| Sbjct 6027 TTGTAGAGCATGTATGGTACTCCCGTTTCAATCTGMGAGTCGAGAATCGATTGCCAGA-- 5970 Query 221891 TCTCTGGCG-CTCACCGTCCTCTTGACTGCACCCT--CGGTCTT-TTCATACCCGGTATA 221946 |||| ||| | | | ||||| | |||| | |||| || ||| ||| Sbjct 5969 -----GGCGTCTCGCAGGCATCTTGCTCGAGCCCTTGCCCTCTTGCTCGTACTTCTCATA 5915 Query 221947 GAGCATGTC-AAACTTTTCACCGTACGCCTCGTCC---AGGCCTGGACACCTGGCGGGAC 222002 | | || | || | || || | || |||| | || |||||| || ||| Sbjct 5914 CAAC-TGCCGGAATTCCTCGCCCCA-GC--AGTCCGATAACCCGGGACACTTGTGAGGAT 5859 Query 222003 ACATCAGACTCCAGT-GCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCAC 222061 |||||| |||| | || || || | || | || |||||| || |||||||||||| Sbjct 5858 CCATCAGCGTCCACTCGCCATTTTTC-TCCACTCGCTCCATGAACAGATCCGGGATCCAC 5800 Query 222062 AGCGC-CTGAAAGAGATCTCTGGTCCGCTGCTCC---TCCACGCCGTTGTTTTTCCTCAG 222117 | || ||| | || || || | || || | || | || | |||||| | || Sbjct 5799 AAAGCAGTGA---ATATGTCGCGTGC-CTTCTTCGATTCATCTCCATGATTTTTCTTGAG 5744 Query 222118 ATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGG 222177 ||| | |||||| |||||| | |||||||||||| | || | ||| | ||| || || Sbjct 5743 ATCGAGAAACTCGCCAATGTCCGGGTGCCACGGCTCGATGTACATGGCAAAAGCACCAGG 5684 Query 222178 TCGCTTGTTGCCACCCTGATCCAC 222201 |||||||| || ||||| || || Sbjct 5683 CCGCTTGTTTCCTCCCTGGTCAAC 5660 >seq166687 Length=11573 Score = 89.7 bits (98), Expect = 1e-12 Identities = 128/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 |||||| ||||| ||||| | |||||| | | |||| | |||||| || || || Sbjct 9523 GGCCAGATTACAAACGGCGATCTCGTCAGGTGCGCTGTACTCGACGATCTCCGTGCACAG 9582 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTT-GCGATTGGCAGCGTCCT 221831 || |||||||||||||| |||||||| | |||||| || || ||| ||| | ||||| Sbjct 9583 ATTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGATTTCGCG-TTGCACGAGTCCT 9641 Query 221832 TGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG 221889 |||||||||| | || | || || || | ||| | | |||||| | |||||| Sbjct 9642 TGTAGAGCATGTATGGCACTCCCGTTTCGATCTGCGAGTCGAGAATCGATTGCCAGAG 9699 >seq246644 Length=20408 Score = 87.8 bits (96), Expect = 3e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 ||| || ||||| ||||| | |||||| | | |||| | |||||| || || || Sbjct 12383 GGCAAGATTACAAACGGCGATCTCGTCAGGTGCGCTGTACTCGACGATCTCCGTGCACAG 12324 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTT-GCGATTGGCAGCGTCCT 221831 ||||||||||||||||| |||||||| | |||||| || || ||| ||| | ||||| Sbjct 12323 ATTGCTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGATTTTGCG-TTGCACGAGTCCT 12265 Query 221832 TGTAGAGCAT 221841 |||||||||| Sbjct 12264 TGTAGAGCAT 12255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 925881158117760