Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Girardia_20tigrina_20[genbank_20GCA_5F001938485.1_202017-01-06] 255,254 sequences; 1,428,149,015 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq252976 95.1 3e-14 seq247874 89.7 1e-12 seq237143 87.8 4e-12 seq222391 87.8 4e-12 seq153466 87.8 4e-12 seq151977 84.2 5e-11 >seq252976 Length=34949 Score = 95.1 bits (104), Expect = 3e-14 Identities = 124/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 305321 AATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCAT 305380 ||||||| || | || ||| | ||||| |||| ||||||||||||||||||| |||| Sbjct 10178 AATGATTTCATTGTATTTAATCGTCAACCGACACTACATAAAATGTCTATGATGGGTCAT 10237 Query 305381 AAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACG-CCTTA 305439 ||| ||||| ||| | | || || || |||||| | || | | | ||||| Sbjct 10238 CGAGTGAAAGTTTTACCATTTTCCACTTTCCGTTTAAATCTTTCTG-TAACAGGTCCTTA 10296 Query 305440 TAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 ||||| || |||||||| |||||||||||| | || | ||||||||| Sbjct 10297 CAATGCTGACTTTGATGGTGATGAAATGAATTTACACATGCCTCAATCA 10345 >seq247874 Length=32156 Score = 89.7 bits (98), Expect = 1e-12 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 227252 TTGATGATGATTTTATAATTGTGAATCGTCAGCCATCATTACATAAAAAATCAATATTAT 227311 |||||||||| ||||| | | |||||||||||| | ||||| |||| || || | | Sbjct 23440 TTGATGATGACTTTATTGTATTCAATCGTCAGCCAACGTTACACAAAATGTCTATGATGT 23381 Query 227312 GTCATCGTGTTAGAATCCATAAGGATTTAGCAATTAGATTGAATCCTAATGTGACAGAGG 227371 | ||||| |||| | | | | | ||| | | || | || |||| ||| || Sbjct 23380 GCCATCGAGTTAAAGTTCTTCACTATTCAACTTTTCGTTTAAATCTCTCTGTAACGTCTC 23321 Query 227372 GCTATAATGCAGATTTTGATGGAGATGAAATGAATGTCCATATACCTCAATC 227423 |||||||| ||||| |||||||||||||||||| | ||||| || ||||| Sbjct 23320 CGTATAATGCCGATTTCGATGGAGATGAAATGAATTTGCATATGCCGCAATC 23269 Score = 84.2 bits (92), Expect = 5e-11 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||| || ||| |||| | || | |||||| | || ||| | | || |||||| Sbjct 23450 AGACATATGCTTGATGATGACTTTATTGTATTCAATCGTCAGCCAACGTTACACAAAATG 23391 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGA-CATTTCGATTAAATGTAAG 305424 ||||||||| ||| ||| ||||| | || ||| | | ||||| |||||| | Sbjct 23390 TCTATGATGTGCCATCGAGTTAAAGTTCT-TCACTATTCAACTTTTCGTTTAAATCTCTC 23332 Query 305425 TGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 || | || |||||||| ||||| |||||||||||||||||| ||||| | || || Sbjct 23331 TGTAACGTCTCCGTATAATGCCGATTTCGATGGAGATGAAATGAATTTGCATATGCCGCA 23272 Query 305485 ATC 305487 ||| Sbjct 23271 ATC 23269 >seq237143 Length=21151 Score = 87.8 bits (96), Expect = 4e-12 Identities = 130/183 (71%), Gaps = 1/183 (1%) Strand=Plus/Minus Query 167207 TTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCGAATTC 167266 || ||| ||||| | ||||| | || || |||||| | ||| ||||||||||| Sbjct 19129 TTGAAATGAGCATTTTAAATCCTCATCTATATTCATTAGCGCTGCAGAGTTATCGAATTC 19070 Query 167267 ATTCGCATAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAATAATTCATA 167326 ||| |||||||| || ||||| | || || ||||| |||||| ||| |||||||| Sbjct 19069 ATTACAGTAATTTGGGGCCGAAAAAATCGTCACCAATTTTCGATTGTTAAAGAATTCATA 19010 Query 167327 ACCATCTTCAACAACTTCATGGGCACGTATTACAAGTT-CAACTCCTAtttttttAAGAA 167385 ||| |||| ||| || | ||| || || | |||| ||| || | ||||| || || Sbjct 19009 ACCGTCTTGAACGACCTGATGAGCCCGGCAAATGAGTTCCAAATCGTTATTTTTCAAAAA 18950 Query 167386 AAT 167388 ||| Sbjct 18949 AAT 18947 >seq222391 Length=93316 Score = 87.8 bits (96), Expect = 4e-12 Identities = 130/183 (71%), Gaps = 1/183 (1%) Strand=Plus/Minus Query 167207 TTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCGAATTC 167266 || ||| ||||| | ||||| | || || |||||| | ||| ||||||||||| Sbjct 1636 TTGAAATGAGCATTTTAAATCCTCATCTATATTCATTAGCGCTGCAGAGTTATCGAATTC 1577 Query 167267 ATTCGCATAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAATAATTCATA 167326 ||| |||||||| || ||||| | || || ||||| |||||| ||| |||||||| Sbjct 1576 ATTACAGTAATTTGGGGCCGAAAAAATCGTCACCAATTTTCGATTGTTAAAGAATTCATA 1517 Query 167327 ACCATCTTCAACAACTTCATGGGCACGTATTACAAGTT-CAACTCCTAtttttttAAGAA 167385 ||| |||| ||| || | ||| || || | |||| ||| || | ||||| || || Sbjct 1516 ACCGTCTTGAACGACCTGATGAGCCCGGCAAATGAGTTCCAAATCGTTATTTTTCAAAAA 1457 Query 167386 AAT 167388 ||| Sbjct 1456 AAT 1454 >seq153466 Length=3913 Score = 87.8 bits (96), Expect = 4e-12 Identities = 130/183 (71%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 167207 TTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCGAATTC 167266 || ||| ||||| | ||||| | || || |||||| | ||| ||||||||||| Sbjct 2023 TTGAAATGAGCATTTTAAATCCTCATCTATATTCATTAGCGCTGCAGAGTTATCGAATTC 2082 Query 167267 ATTCGCATAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAATAATTCATA 167326 ||| |||||||| || ||||| | || || ||||| |||||| ||| |||||||| Sbjct 2083 ATTACAGTAATTTGGGGCCGAAAAAATCGTCACCAATTTTCGATTGTTAAAGAATTCATA 2142 Query 167327 ACCATCTTCAACAACTTCATGGGCACGTATTACAAGTT-CAACTCCTAtttttttAAGAA 167385 ||| |||| ||| || | ||| || || | |||| ||| || | ||||| || || Sbjct 2143 ACCGTCTTGAACGACCTGATGAGCCCGGCAAATGAGTTCCAAATCGTTATTTTTCAAAAA 2202 Query 167386 AAT 167388 ||| Sbjct 2203 AAT 2205 >seq151977 Length=7711 Score = 84.2 bits (92), Expect = 5e-11 Identities = 76/93 (82%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 167250 CCAGCATTATCGAATTCATTCGC-ATAATTTGGTGCTGAAAATACAGTAACTAATTTACG 167308 || |||||||||||||| | ||| ||||||||| || ||||||| || ||||||| || Sbjct 1148 CCTGCATTATCGAATTC-TCCGCAATAATTTGGAGCAGAAAATAATGTTACTAATTGTCG 1206 Query 167309 ATTGAAAAATAATTCATAACCATCTTCAACAAC 167341 || ||| ||||||||||||||||| ||||| Sbjct 1207 CTTAGCAAAAAATTCATAACCATCTTCCACAAC 1239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1182931397721094