Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Girardia_20tigrina_20[genbank_20GCA_5F001938485.1_202017-01-06] 255,254 sequences; 1,428,149,015 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq230650 183 4e-41 >seq230650 Length=142828 Score = 183 bits (202), Expect = 4e-41 Identities = 425/632 (67%), Gaps = 18/632 (3%) Strand=Plus/Plus Query 146774 AAACCGCCAGCGCCATGGGGATGGAGGGGTGCGGGTGGTAGCCCTCGAGGGCAAAATCTT 146833 |||| |||| | |||||| ||| || || || | ||| |||||| ||| || | Sbjct 94498 AAACGGCCATCTCCATGGAGATTTTCGGATGAGGATCGTAATCCTCGATAATAAAGTCCT 94557 Query 146834 CTGCCCTGAAA-TCGTCTATGTCCTCCACCCGCCTCAAAATCTTGAGCTTGGGGAAGGGT 146892 | | |||||| || || ||||| ||| ||| || |||||| |||| || ||| Sbjct 94558 C-GTACTGAAAGTCTTCAATGTCTGTCACGGATCTCCGAAACTTGAGTCTGGGAAACGGT 94616 Query 146893 CGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCG 146952 | || | || || ||| | || | ||||||||||| | ||||||||||||| Sbjct 94617 CTCGGCTCTCTCTTCATCTGCGTCGACAAAGCGTCCACGTGGTTCAAGTAGACGTGCGCG 94676 Query 146953 TCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAG 147012 ||||| || | ||| | | |||| || || | || || |||||||| |||||| | Sbjct 94677 TCCCCGAGCGAGTGAATCAGCGCCCCGGGTTTGTGTCCCGTGACGTGGGCAACCATGCGG 94736 Query 147013 GTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTC 147072 || || | || || ||||| || ||||| || ||||| || |||||||| | |||||| Sbjct 94737 GTCAGTATCGCATAACTGGCGATATTGAACGGCACCCCGAGCCCCATGTCAGCGGACCTC 94796 Query 147073 TGGTACAGCTGGCACGAGAGCTCCCCGTCGG------CCACGTAAAACTGGCACAGGATG 147126 ||||||| || |||||| | || || || | || | ||||| ||| | Sbjct 94797 TGGTACAACTTGCACGACAAATCGTCGGAGGCGCGGTCGACATGGAACTGCATCAGACAG 94856 Query 147127 TGGCACGGCGGCAGCGCCATGGCGGGCAGGTC-CGCGGGGTTCCAGGCCGAGACCACCAG 147185 |||||||| |||||||||||| |||| || ||| |||||||||||| |||||||| Sbjct 94857 TGGCACGGAGGCAGCGCCATGAGCGGCACATCGCGC-GGGTTCCAGGCC---ACCACCAG 94912 Query 147186 CCGCCT---GCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCAC 147242 || | | | || || ||| ||| | || || || |||||||| | Sbjct 94913 GTGCGTCTCGGTGTCCGGATTCTCGCGGATCGATCTAATCACGTGCCCGAGCTGGTCGAA 94972 Query 147243 GCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTG 147302 |||||||| ||| | || | ||| |||| |||||| || || |||||||| Sbjct 94973 TCCCTGGCCGGTGTAATCGGTGCGCTTGTCGCGGTACTCGGCCCCGAAATGTCTCCACTG 95032 Query 147303 GAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCGC-CCGCTTGA 147361 ||| |||||||| ||||| || ||||| || | | ||| | ||||||| | || | Sbjct 95033 GAACCCGTACACCGGCCCGAGATCGCCCGGTTCCCGATGCCCG-AGCCCGCGACTCTCCA 95091 Query 147362 GAAACTCGGGGGACCCGTGGGCGTCCCAGATG 147393 | ||||| | |||| |||||||| ||| Sbjct 95092 GGAACTCTTTGCTGCCGTTCGCGTCCCAAATG 95123 Score = 86.0 bits (94), Expect = 7e-12 Identities = 119/163 (73%), Gaps = 3/163 (2%) Strand=Plus/Minus Query 146926 TCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTA 146985 ||||||||||| || |||||||||||||| || || ||| || | || | || || Sbjct 56023 TCCACGTGGTTTAG-TAGACGTGCGCGTCTCCGAGAGTGAAT-CAGCG-CCACGGGTTTG 55967 Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045 | || || |||||||| |||||| ||| || | || ||| ||||| || || || || Sbjct 55966 TGTCCCGTGACGTGGGCGACCATGCGGGTCAGTATCGCGTAACTGGCGATATTAAACGGT 55907 Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACG 147088 |||| || ||||| | | ||||||||||||| || | ||| Sbjct 55906 ACCCTGAGCCCCATATAAGCGGACCTCTGGTACAACTTGTACG 55864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581626279425600