Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Girardia_20tigrina_20[genbank_20GCA_5F001938485.1_202017-01-06] 255,254 sequences; 1,428,149,015 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq211385 122 7e-23 seq12314 122 7e-23 seq217494 89.7 4e-13 >seq211385 Length=3642 Score = 122 bits (134), Expect = 7e-23 Identities = 180/254 (71%), Gaps = 6/254 (2%) Strand=Plus/Plus Query 43736 CAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAA 43795 |||||||| ||| | || | | || |||||||||| |||||| | ||||| | ||| Sbjct 1796 CAAATGTATAAACACGCTCTTGATTCCTTTTGGACAGTTGAAGAAATAAATTTGTCGAAA 1855 Query 43796 GACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTG 43855 || ||| |||| | |||||||| ||||| ||||||| || || || | Sbjct 1856 GA--TAGA----TGGAACGACTTAAAACCGGAAGAACAACATTTCATTTCGCATGTCCTT 1909 Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915 || ||||| || || || || || ||||| ||||||||||||| | ||| | || Sbjct 1910 GCCTTTTTCGCAGCCAGTGATGGAATAGTTAATGAAAATTTGGCAGAAAGATTTCTGAAA 1969 Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 ||||| || | || |||||| | |||||| | || ||||| || || ||||||||| Sbjct 1970 GAAGTAAAAATGCCGGAAGCAGAAGCTTTTTACAGTTTCCAAATAGCAATGGAAAATATT 2029 Query 43976 CATTCGGAAATGTA 43989 ||||| |||||||| Sbjct 2030 CATTCAGAAATGTA 2043 >seq12314 Length=2576 Score = 122 bits (134), Expect = 7e-23 Identities = 180/254 (71%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 43736 CAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAA 43795 |||||||| ||| | || | | || |||||||||| |||||| | ||||| | ||| Sbjct 1847 CAAATGTATAAACACGCTCTTGATTCCTTTTGGACAGTTGAAGAAATAAATTTGTCGAAA 1788 Query 43796 GACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTG 43855 || ||| |||| | |||||||| ||||| ||||||| || || || | Sbjct 1787 GA--TAGA----TGGAACGACTTAAAACCGGAAGAACAACATTTCATTTCGCATGTCCTT 1734 Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915 || ||||| || || || || || ||||| ||||||||||||| | ||| | || Sbjct 1733 GCCTTTTTCGCAGCCAGTGATGGAATAGTTAATGAAAATTTGGCAGAAAGATTTCTGAAA 1674 Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 ||||| || | || |||||| | |||||| | || ||||| || || ||||||||| Sbjct 1673 GAAGTAAAAATGCCGGAAGCAGAAGCTTTTTACAGTTTCCAAATAGCAATGGAAAATATT 1614 Query 43976 CATTCGGAAATGTA 43989 ||||| |||||||| Sbjct 1613 CATTCAGAAATGTA 1600 >seq217494 Length=14875 Score = 89.7 bits (98), Expect = 4e-13 Identities = 201/298 (67%), Gaps = 8/298 (3%) Strand=Plus/Plus Query 43719 AATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAG 43778 |||||| || | ||| |||||| ||| |||||||| | || |||||| | |||| Sbjct 2975 AATATCCGGATGTGTGGGAAATGTTCAAGAAAGCACAAACATCGTTTTGGGTGGTCGAAG 3034 Query 43779 AAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATT 43838 |||| |||| | ||||| | || ||| | ||| | || | || ||| | | Sbjct 3035 AAGTCAATTTATCGAAAGAT-----AAATGGGACTT-ATTGACCGCAAATGAGAAATACT 3088 Query 43839 TTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGG 43898 | || ||| || |||||||||||||| ||||| ||||| || || || || ||| | | Sbjct 3089 TCATTTCTCATGTGTTGGCGTTTTTTGCGGCGAGTGACGGCATCGTGAACGAGAATCTCG 3148 Query 43899 TTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATG-TTTTTATGGGTTTCAA 43957 | | ||| || |||||| || | | ||||| || | |||||| || || Sbjct 3149 TGGAGAGATTTATACATGAAGTTAAAATGCTGGAAGC-GGAGGCGTTTTATTCCTTCCAG 3207 Query 43958 ATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCA 44015 || ||||| || || ||||| ||||| |||||| | |||| |||| ||||||| Sbjct 3208 ATCGCCATGGAGAACATTCACTCGGAGATGTACTCGATATTGATCGATAGATACATCA 3265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396219550900270