Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Girardia_20tigrina_20[genbank_20GCA_5F001938485.1_202017-01-06] 255,254 sequences; 1,428,149,015 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq175777 105 7e-18 seq236677 100 3e-16 seq207016 100 3e-16 seq130724 100 3e-16 >seq175777 Length=2924 Score = 105 bits (116), Expect = 7e-18 Identities = 296/452 (65%), Gaps = 12/452 (3%) Strand=Plus/Plus Query 53516 TTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCC 53575 ||||| || | || ||||||||| ||||||| || ||||| || | || ||| Sbjct 2478 TTCAATTACGCCGCGCGGTACGTCGACCAGGGAGGCAACAAGCGACCCGGCGCTTTTGCC 2537 Query 53576 ATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAG 53635 || ||| |||||||||||||| | |||||| ||||| |||||||| |||||| Sbjct 2538 ATGTACATCGAGCCGTGGCACCCGGACATTGGCGAGTTCCTCGAGCTCAAGAGGAATCAC 2597 Query 53636 GGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTC 53695 || || ||| || | || ||| | || || || |||||||| ||||| || ||| Sbjct 2598 GGGGATGAATCGAAGAAGGCGCGCGACATATTCACCGCCCTGTGGATCCCGGATCTGTTC 2657 Query 53696 ATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGC 53755 ||| | |||||||| | | |||||| |||||| ||| || |||| ||||| Sbjct 2658 ATGGAGCGAGTGGAGAAAAATGGCGAGTGGACGCTGATGGACCCTCACAAGTGTCCCGGG 2717 Query 53756 CTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACG-----CAGTTC 53810 | || || || ||| | || || ||||| || ||||| || | Sbjct 2718 TTATCGGACTGCTGGGGCGAGCAATTCCGGCAGTTGTATGAGAAGTACGAGCAAGAGGGC 2777 Query 53811 AGGGCCGCTA-CAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGC 53869 | || | | | ||||| | | | |||||| | ||| | | || ||| | Sbjct 2778 AAGGGCTCGAGCAAGATGCCAG-CGAGGCGC-----CTCTGGCAATCGATTCTCGACTCG 2831 Query 53870 CAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAAC 53929 ||| | ||||||||| |||||||||| ||||||||| || ||||| ||| |||| Sbjct 2832 CAGATCGAGACGGGAGTGCCGTACATGCTCTACAAGGACGCGTGCAACGCGAAATCCAAC 2891 Query 53930 CAGAAGAACATCGGCGTCATCAAATCGAGCAA 53961 || || || | ||| |||||| | ||||| Sbjct 2892 CACCAGCACCTGGGCACCATCAAGTGCAGCAA 2923 >seq236677 Length=19943 Score = 100 bits (110), Expect = 3e-16 Identities = 310/477 (65%), Gaps = 2/477 (0%) Strand=Plus/Plus Query 53279 CACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTC 53338 ||||| | ||||| || || ||||| || | | | |||| | || ||||| ||| Sbjct 19354 CACGCTTCTCCAACACTTTTTAACGCAGGAAAAAGATTCGCTCAACTCTCAAGCTGTTTC 19413 Query 53339 CTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCC 53398 || || | || |||| ||||| ||||| || || | || || | ||||| ||| Sbjct 19414 TTGTTGACAATCAAGGGCGACTCCATCGAAGGAATATTTGACACAGTGAAGGACTGTAGT 19473 Query 53399 CACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGG 53457 |||||| || | ||||| |||||| || | | | | || || ||| || Sbjct 19474 ATCATCTCAAAACATGCCGGTGGAATCGGTCTCAATATACACAGTATTCGGT-CGACTGG 19532 Query 53458 CACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTT 53517 ||| ||||| ||||||||||| | | | || || || ||| ||| | || Sbjct 19533 CACTCCAATTGCCGGGACGAACGGAACCTCTAACGGTCTCACTCCAATGATCCAGATGTT 19592 Query 53518 CAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCAT 53577 ||| || || || ||||| ||||||| || ||||| || | || ||||| Sbjct 19593 CAATTACGTCGCGCGATACGTTGACCAGGGAGGAAACAAGCGGCCTGGTGCTTTTGCCAT 19652 Query 53578 CTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGG 53637 ||| |||||||||||||| | |||||| ||||||||||| || ||||| || Sbjct 19653 GTACATCGAGCCGTGGCACCCGGACATTGGCGAGTTTCTCGATCTCAAGAAAAATCATGG 19712 Query 53638 TGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCAT 53697 || ||| || | || ||| | || || ||| ||||||| ||||| || ||||| Sbjct 19713 AGATGAATCGAAGAAGGCACGCGACATATTCACTGCTTTGTGGATCCCGGATCTGTTCAT 19772 Query 53698 GCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGG 53754 | | |||||||| | | |||||| |||||| || || |||| ||||| Sbjct 19773 GGAGCGAGTGGAGAAAAATGGCGAGTGGACGCTGATGGATCCTCACAAGTGTCCCGG 19829 >seq207016 Length=9131 Score = 100 bits (110), Expect = 3e-16 Identities = 310/477 (65%), Gaps = 2/477 (0%) Strand=Plus/Plus Query 53279 CACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTC 53338 ||||| | ||||| || || ||||| || | | | |||| | || ||||| ||| Sbjct 5402 CACGCTTCTCCAACACTTTTTAACGCAGGAAAAAGATTCGCTCAACTCTCAAGCTGTTTC 5461 Query 53339 CTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCC 53398 || || | || |||| ||||| ||||| || || | || || | ||||| ||| Sbjct 5462 TTGTTGACAATCAAGGGCGACTCCATCGAAGGAATATTTGACACAGTGAAGGACTGTAGT 5521 Query 53399 CACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGG 53457 |||||| || | ||||| |||||| || | | | | || || ||| || Sbjct 5522 ATCATCTCAAAACATGCCGGTGGAATCGGTCTCAATATACACAGTATTCGGT-CGACTGG 5580 Query 53458 CACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTT 53517 ||| ||||| ||||||||||| | | | || || || ||| ||| | || Sbjct 5581 CACTCCAATTGCCGGGACGAACGGAACCTCTAACGGTCTCACTCCAATGATCCAGATGTT 5640 Query 53518 CAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCAT 53577 ||| || || || ||||| ||||||| || ||||| || | || ||||| Sbjct 5641 CAATTACGTCGCGCGATACGTTGACCAGGGAGGAAACAAGCGGCCTGGTGCTTTTGCCAT 5700 Query 53578 CTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGG 53637 ||| |||||||||||||| | |||||| ||||||||||| || ||||| || Sbjct 5701 GTACATCGAGCCGTGGCACCCGGACATTGGCGAGTTTCTCGATCTCAAGAAAAATCATGG 5760 Query 53638 TGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCAT 53697 || ||| || | || ||| | || || ||| ||||||| ||||| || ||||| Sbjct 5761 AGATGAATCGAAGAAGGCACGCGACATATTCACTGCTTTGTGGATCCCGGATCTGTTCAT 5820 Query 53698 GCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGG 53754 | | |||||||| | | |||||| |||||| || || |||| ||||| Sbjct 5821 GGAGCGAGTGGAGAAAAATGGCGAGTGGACGCTGATGGATCCTCACAAGTGTCCCGG 5877 >seq130724 Length=3734 Score = 100 bits (110), Expect = 3e-16 Identities = 310/477 (65%), Gaps = 2/477 (0%) Strand=Plus/Minus Query 53279 CACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTC 53338 ||||| | ||||| || || ||||| || | | | |||| | || ||||| ||| Sbjct 590 CACGCTTCTCCAACACTTTTTAACGCAGGAAAAAGATTCGCTCAACTCTCAAGCTGTTTC 531 Query 53339 CTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCC 53398 || || | || |||| ||||| ||||| || || | || || | ||||| ||| Sbjct 530 TTGTTGACAATCAAGGGCGACTCCATCGAAGGAATATTTGACACAGTGAAGGACTGTAGT 471 Query 53399 CACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGG 53457 |||||| || | ||||| |||||| || | | | | || || ||| || Sbjct 470 ATCATCTCAAAACATGCCGGTGGAATCGGTCTCAATATACACAGTATTCGGT-CGACTGG 412 Query 53458 CACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTT 53517 ||| ||||| ||||||||||| | | | || || || ||| ||| | || Sbjct 411 CACTCCAATTGCCGGGACGAACGGAACCTCTAACGGTCTCACTCCAATGATCCAGATGTT 352 Query 53518 CAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCAT 53577 ||| || || || ||||| ||||||| || ||||| || | || ||||| Sbjct 351 CAATTACGTCGCGCGATACGTTGACCAGGGAGGAAACAAGCGGCCTGGTGCTTTTGCCAT 292 Query 53578 CTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGG 53637 ||| |||||||||||||| | |||||| ||||||||||| || ||||| || Sbjct 291 GTACATCGAGCCGTGGCACCCGGACATTGGCGAGTTTCTCGATCTCAAGAAAAATCATGG 232 Query 53638 TGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCAT 53697 || ||| || | || ||| | || || ||| ||||||| ||||| || ||||| Sbjct 231 AGATGAATCGAAGAAGGCACGCGACATATTCACTGCTTTGTGGATCCCGGATCTGTTCAT 172 Query 53698 GCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGG 53754 | | |||||||| | | |||||| |||||| || || |||| ||||| Sbjct 171 GGAGCGAGTGGAGAAAAATGGCGAGTGGACGCTGATGGATCCTCACAAGTGTCCCGG 115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545470011589200